Ralstonia solanacearum UY031: RSUY_16570
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Entry
RSUY_16570 CDS
T06155
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rsy
Ralstonia solanacearum UY031
Pathway
rsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSUY_16570 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsy03019
]
RSUY_16570 (rnr)
03016 Transfer RNA biogenesis [BR:
rsy03016
]
RSUY_16570 (rnr)
Enzymes [BR:
rsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RSUY_16570 (rnr)
Messenger RNA biogenesis [BR:
rsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RSUY_16570 (rnr)
Transfer RNA biogenesis [BR:
rsy03016
]
Prokaryotic type
tRNA degradation factors
RSUY_16570 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ALF87999
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All DBs
Position
1764586..1767129
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AA seq
847 aa
AA seq
DB search
MLRTSGSPLSAADIAKALSVTRKEHDGFIKRLTAMERDGQLELNRKGRYELAHQPNFIEG
RVVGHRDGYGFFIRDDGEPDIFLPEREMQKAMHGDRALVRVIGYDRRGRSEGQIVEMLER
ANRYVIGRLLSESGTLVVAPEDKRLGRDILIAPKGQGKAKVGQVVSVEILEYPDRYVQPI
GRVVEVLGEIDDPGMEIEIAVRKYGVPHAFSDAALGESEALPDTVRESDLAGRIDLRDVS
LVTIDGEDARDFDDAVYCEPVKIGRGKGWRLIVAIADVSHYVQPGKALDVDAIDRATSVY
FPRRVIPMLPEKLSNGLCSLNPEVDRLCMVCDAVITAKGQIKAYQFYPAVMHSAARLTYN
EVWSILSNVKGPEAAKRAPLVPHLQDLYELFQVLLKARRERGAIDFDTTETYIVCNAQGK
IEQILPRTRNDAHRLIEECMLTANVCAAEMLERYKHPALYRVHAGPTEEKLQALRAFLKT
SGLTLGGGDKPQAADYAELMEKIVARPDAPMLQTMLLRSMQQAVYSPDNVGHFGLSYEAY
AHFTSPIRRYPDLLVHRSIKAILQHSRYVPALASGVQLNSALSPKARRMQAEADKGTPAA
VASKAKVDAIWHELGVHCSANERRADEASRDVEAWLKCYFMRDKLGNEFSGTVSAVTSFG
IFVQLDELYVEGLVHVTELGSDYFQFDEARNELRGERTGIRYRLTDRVRVQLLRVDLDAR
KMDFRLIQEPSVKALRPAKVAGAPAEAAARQPVVATPAPPVGRKKPRQLAALLGGTAKPE
ESFDETLDRVFEEQPVFEPGSRALPPGHAHAKPSRKKPAARTTKPKTGGKTVTRKAAGKS
VRSRKGR
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcgcacttcggggtctccgctgtctgccgccgacatcgcaaaggcgctgtctgtc
acgcgcaaggagcatgacggcttcatcaaacggctgaccgccatggagcgggacggccag
ctcgaactcaaccgcaaggggcgctacgagctggcgcaccagcccaattttatcgaaggc
cgcgtggtcggccaccgggacggctacggcttcttcatccgcgacgatggcgaacccgac
atcttcctgcccgagcgcgagatgcagaaggccatgcatggcgaccgcgcactggtgcgc
gtgatcggctatgaccgccgcgggcgttcggaggggcagatcgtcgagatgctggagcgc
gccaaccgctatgtgatcggccggctgctgtcggagagcggcacgctggtggtggcaccc
gaggacaagcgcctgggccgcgacatcctgatcgcgcccaaggggcagggcaaggccaag
gtcggccaggtggtgagcgtggagatcctggagtacccggaccgctacgtgcagccgatc
ggccgcgtggtcgaggtgctgggggagatcgatgatcccggcatggagatcgagatcgcg
gtgcgcaagtacggcgtgccgcatgcgttttccgacgccgcgctgggcgagtcggaggcg
ctgcccgatacggtgcgcgaatccgacctggccggccggatcgacctgcgcgatgtttcg
ctggtcaccatcgacggcgaggatgcgcgcgacttcgacgacgcggtctactgcgagccg
gtcaagatcggtcgaggcaagggctggcgcctgatcgtggcgatcgccgacgtgtcgcac
tatgtgcagccgggcaaggcactcgacgtggatgcgatcgaccgcgcgacctcggtctac
ttcccgcggcgcgtgatcccgatgctgccggagaagctgtccaacggcctgtgctcgctg
aatccggaggtggaccgcctgtgcatggtctgcgacgcggtgatcacggccaaggggcag
atcaaggcgtatcagttctatccggccgtgatgcactcggcggcgcgcctgacctacaac
gaggtctggtcgatcctgtccaacgtgaagggaccggaggcggccaagcgggcgccgctg
gtgccgcatctgcaggatctgtacgagctgttccaggttctgctgaaggcgcgccgcgag
cggggcgctatcgacttcgacaccaccgagacctatatcgtctgcaatgcgcagggcaag
atcgaacagatcctgccgcgcacccgcaacgacgcgcaccggctgatcgaggagtgcatg
ctgaccgccaacgtctgcgcggcggagatgctggagcgctacaagcatccggcgctgtat
cgcgtgcatgccggcccgaccgaagagaagctgcaggcgctgcgcgcgttcctcaagacc
agcggcctgacgctgggcggcggcgacaagccccaggcggccgactacgccgagctgatg
gaaaagatcgtcgcgcgccccgatgcgccgatgctgcagaccatgctgctgcgctcgatg
cagcaggcggtctacagccccgacaacgttggccacttcggcttgtcgtacgaagcctac
gcgcacttcaccagcccgatccgccgctatccggacctgctggtgcaccgctccatcaag
gccatcctgcagcattcgcgttatgtgccggcgctggcgtcgggcgtgcagctcaacagt
gcgctgtcgcccaaggcgcgccgcatgcaggccgaagccgacaagggcaccccggccgcc
gttgccagcaaggccaaggtcgatgcgatctggcacgaactgggtgtgcactgctcggcc
aacgagcgccgcgccgacgaggcctcgcgcgacgtggaggcctggctcaagtgctacttt
atgcgtgacaagctgggcaacgagttctccggtaccgtcagcgcggtcacttcgttcggt
atcttcgtgcagctcgacgagttgtacgtggagggcctggtgcatgtgaccgagctgggc
agcgactatttccagttcgacgaggcccgcaatgaactgcgcggcgagcgcaccggcatc
cgttatcgcctgaccgatcgtgtgcgcgtgcagttgctgcgcgtcgatctggatgcgcgc
aagatggatttccggctgatccaggagccgtcggtcaaggcactgcgcccggccaaggtg
gccggtgcgccggcagaagcggccgcgcgtcagccggtcgtcgccacgccggcgccgccg
gtcggacgcaagaagccgcgtcagctggcggccttgctgggcggcacggccaagccggag
gaatcgttcgacgagacgctggaccgcgtgttcgaagagcagccggtgttcgagccgggg
tcgcgcgccttgccgccgggccatgcgcatgccaagccgtcgcgcaagaaaccggccgcg
cgcacgaccaagcccaagacgggcggcaagaccgtgacgcgcaaggcggcgggcaagtcc
gtgcggtcgcgcaaggggcggtga
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