Raphanus sativus (radish): 108808747
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Entry
108808747 CDS
T06014
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108808747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108808747
Membrane trafficking [BR:
rsz04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
108808747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
WD40
zf-RING_2
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
108808747
NCBI-ProteinID:
XP_018436355
UniProt:
A0A6J0JL22
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MASLPSENGVDGDDEREEEEDEEEEEEENGEEEEEEGEEEPRLKYQRMGGNVPSLLSNDA
ASCIAVAARMIALGTHDGTVHILDFLGNQVKEFRAHTAPVNDLSFDTEGEYIGSCSDDGS
VVINSLFTDDEKLRFEYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGYKDQ
VLHSGEGPIHSVKWRGSLIAWANDTGVKVYDTAKDQRVTFIERPRGSPRPEALIPHLVWQ
DDTLLVIGWGTSVKIASIKSDQQKPAYGTYRQVQMSSLNQVDIVASFQTSYFISGIAPFG
DSLVILAYIPTEEDGVKEISSTTTLSRQGNAQRPEVRIVSWNSDELTMDALPVHGFEHYK
AKDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHINWLLQHGFHEK
ALAAVEAGEGRNELIDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQL
RQLPVLVPFMPTDNPRLKDTVYEVALVALATNPSYHKELLSTVKSWPRAVYSALPVISAI
EPQLNTSSMTDALKEALAELYVIDGQHEKAFALYADLLKPEVFDFIEKYNLHEAIRGKVV
QLMLLDCKRATALFIQNRDLIAPSEVVPQLLKAGKKCDSRYYLYLYLHALFQVGPNSGKD
YHDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDLLKEQVFVLGRMGNAKQALA
VIINKLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDPLYIVNMVP
NGLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLIKCFNEARRGVCLSNEEDD
SRGKREDTNRSISQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVVVFFCCH
AYHMTCLMDAAFSDSNNKTAKGSPGYGYGYDNGVEEEDTEDEEEDDSNDGDRSGRSRLRC
ILCTTAAAASAR
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcttccgtctgaaaacggcgtcgacggagatgacgagagagaggaggaggaa
gatgaagaagaagaagaagaagagaacggagaagaagaagaagaagagggagaggaggag
ccacgtctcaagtaccagcggatgggtggaaacgtaccttcgttgctctccaacgacgct
gcttcctgcatcgccgtcgccgcaaggatgatcgctctcggtactcacgacggaacggtc
cacatcctcgatttcctcggcaatcaggttaaagagtttcgtgcccacactgctccggtt
aatgacctgagctttgacactgagggagagtatatcggaagctgttcagacgatggctct
gttgtgataaacagccttttcactgatgatgagaagttgagattcgagtatcatcgcccc
atgaaggcgatttccttggatccggattacaccaagaagcagtcgaagagatttgtggct
ggtggactggctggtcacttgtatatgaactcaaagaagtggttcggttataaagatcag
gtgctgcattctggggaaggtccaatccattctgtgaaatggagaggaagtctcatcgcc
tgggctaatgatactggcgttaaagtttatgatacagccaaagatcagcgtgttactttt
atcgaaagaccacgaggaagtccccggcctgaggctttgattccacacttggtttggcag
gatgacactcttcttgtgattggttggggaacatccgtcaaaattgcttcaattaaatca
gaccagcaaaaaccagcatatggaacgtataggcaggttcagatgtctagtctaaaccaa
gtggacattgtggcatcgttccagactagctatttcatttcggggattgctccctttggt
gattctctagttattcttgcatatatacccactgaagaagatggcgtgaaagaaattagc
agcaccactactttatctcgtcagggaaatgcccagaggcctgaagtacgtattgtatca
tggaacagtgatgaacttacaatggatgcgcttccggtacatggctttgagcattacaag
gcgaaagactattcccttgctcatgctcctttcccaggtagtagctatgctggggggcag
tgggctgctggtgatgaaccactgtactatatcgtgtctccaaaggatgttgtgattgca
aaacccagggatgccgaagatcatattaactggcttttgcaacatggattccacgagaaa
gcactagcagctgttgaggctggtgaaggacgaaacgaactaattgataaggtgggtgct
gggtatcttgatcatttgattgtggaaagaaaatatgccgaagcagcatcgttgtgccca
aaattgttacgaggatctgcttcagcctgggagaggtgggttttccattttgctcaacta
cgccagctgcctgtgcttgttccattcatgcctaccgataacccaaggctcaaggatact
gtctatgaggttgctctagtggcactggcaacaaacccctcataccataaggagcttttg
tccactgttaaatcttggccgcgtgcagtatactctgctttgcctgttatctcagcaata
gagcctcagttgaacacatcttcaatgactgatgccctcaaagaggcgctggcagagctg
tatgtaattgatggacagcacgagaaagccttcgccctatatgctgatcttctcaaacca
gaagtgttcgacttcattgagaaatacaatttgcatgaggcgattcgtggaaaggttgtc
cagttaatgttgcttgattgcaagcgtgccactgccttatttatccaaaacagggatttg
attgctccatctgaagtggtcccacaacttttgaaagctggcaagaaatgtgattcgaga
tattacttgtacttatatctacatgcgttatttcaagtcggtccaaatagtgggaaggat
tatcatgatatgcaggtagaactatatgcggaatacgatactaagatgctgcttccattc
ctacgtagcagtcaacattacaagttagaaaaggcatatgaactttgtgtcaagaaagat
ctgctaaaagagcaagtttttgtacttggaaggatgggaaatgcaaaacaagctcttgct
gtcatcataaataaattaggggatatagaagaggctgtggaatttgtgtccatgcagcac
gacgatgatctctgggaagaactgataaaacaatgtctgaacaagcctgagatggtaggc
ttactgttggagcacacggttggcaaccttgaccctctttacatcgtaaatatggtccca
aatggcttggaaatacctcgactaagggatcgattggtcaaaatcgtgacagattacaga
accgagacatctcttagacacggttgcaatgacattctcaagacggacattgtgaatctt
ctgatcaagtgcttcaacgaggcgagacgtggggtctgcctaagcaacgaagaagacgat
tcccgtggaaagagagaagacactaatcgatcgatctcacagagaatggtagtagataaa
tcattgagcataaagatgacagaggtgaagtcgaagacacgcggggacacacgttgttgc
atgtgcttcgacccggtgtcgataagaggggacaccgtggtggtcttcttttgctgtcat
gcttaccacatgacgtgtctcatggatgctgccttcagcgacagcaacaataagacagcc
aaaggttctccggggtatggatacggctatgataacggtgtggaggaggaagatactgag
gatgaggaagaagatgacagtaatgatggagacaggtctgggaggtctcggttacggtgc
atattatgtactactgccgctgctgcgtccgctcggtag
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