Raphanus sativus (radish): 108812340
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Entry
108812340 CDS
T06014
Name
(RefSeq) helicase-like transcription factor CHR28
Organism
rsz
Raphanus sativus (radish)
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
DEAD
zf-RING_5
zf-RING_2
zf-RING_UBOX
Prok-RING_4
HDA2-3
zf-rbx1
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
108812340
NCBI-ProteinID:
XP_018440082
UniProt:
A0A6J0JZA7
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Position
6:9888777..9894236
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AA seq
1174 aa
AA seq
DB search
MGEEGSAVVALGGDGFPPDDSDVGFEFEDDDEDLTIDFETIYRILDEKPPDFTEGSQETL
SPAGSSPDDLKGSHLQNGTQMVDSFASPSGTGLSGSFDDHVKLDSGSLSPSSLKDWFSVS
QDEKPIEPYAFSYNSNALSNPADHSSAQNCYNTSGASLSEHTPSFAFQFFPNKEEAVNDV
DSRVSECLSDGASRMVFDKHGRVDYGYLDRKPVVDFSSTGPSVPLPCAKPYNTFDSHLAD
NDVDRPDNCSSSFLRNKAAPVEVKPEAELDKLVFSSVPKAENIIDPVNAPGETSHWWSGA
SGCSLSYQTDIEEGFTFMAQQTSFPSQDNGNSNKFYDSNACLQYVAADPSPATQINGYLG
SLTQQVNQEHIQPRSVDYNFSNGSFESVQNLSGESISDSDDDSDVYIIEPNGQSVNPYRP
LAIKSPVVSSQYSSSGHTFNQPGGTRLQSNKENMIFQAALQDLSLPDAEANVPDGVLAVP
LMRHQRIALSWMSNKETTGFPCSGGILADDQGLGKTISTIALILKERSTPSRTCEESIKK
EVFDLESEGGECASSEPNEQSEQVDGNSVDKVRGRPAAGTLVVCPTSVMRQWGDELRKKV
TSEANLSVLVYHGSSRTKDPHELAKYDVVVTTYSIVSMEVPKQPLVDVEDEEKDDLHNGE
GAAGDLCPNKKRKYPPDSQKKGSKKKKRLDRASVEAQSGPLAKVSWFRVVLDEAQSIKNH
KTQVARACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYNLFCNSIKNPVAKT
PVRGYQKLQAILKTVMLRRTKGSLIDGKPIISLPPKSIELRKVDFTEEERDFYTNLESES
RSQFQEYKEAGTVKQNYVNILLMLLRLRQACDHPLLVKGEYSFTWEASLGLAKKENFSEA
SLQICGICSDSPEDAVVSVCGHVFCKQCFYECITGDDNLCPMANCNGRLSAMPSMHDSAT
SVHVETADSCSEGLPYESSKIKAALEILQSLARPQDLTDMKQISQKGADSVTPLKVVGEK
AIVFSQWTKMLDLLEASLISSRIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKAA
SLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKETVEDRILALQQ
KKRMMVASAFGEDEKGSRQSHLTVEDLNYLFMAD
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggagggttcagcggttgttgccctaggcggcgatggatttcctcctgatgat
tccgatgttggttttgagtttgaggacgacgatgaagatctcactattgacttcgaaacg
atttaccgtattctagatgagaagccgcccgattttactgagggtagccaagaaacttta
tctccagctggttcctctcctgacgacctcaagggttcacacttgcaaaatggaactcag
atggttgattcctttgcttcgccttctgggactgggttgtctggttcatttgatgaccat
gtcaaacttgactctggcagccttagtccttcaagtcttaaagattggttttctgtgagc
caagatgagaagcctatcgaaccctatgctttttcttataactccaatgctctcagtaac
cctgcggatcactcttctgcacaaaattgctacaatacaagtggtgcttccttatccgaa
catacccccagtttcgcatttcagttctttcccaacaaagaagaagctgtaaatgatgtt
gactctcgtgtgagcgagtgtctgtcggatggtgccagccggatggtttttgataaacac
gggagagtagattacggatacttagacaggaaacctgttgtcgatttctctagtactgga
ccctcagttcctcttccctgtgccaaaccgtacaatacttttgacagtcacttagctgat
aatgatgttgaccggcctgataattgttcaagcagttttctgcgtaataaagctgcccct
gtcgaggttaagccagaggctgagttagataaactggtttttagttcagttccaaaggca
gaaaacattattgaccctgttaatgcacctggggaaaccagtcattggtggtctggtgca
tctggctgttcactctcctatcagacagatattgaagaaggattcacatttatggcacag
caaactagtttccctagtcaagacaatggcaactccaataaattttatgattcaaatgca
tgtttgcaatatgtagcagcagatccgagcccagcgacacagatcaatgggtacttaggc
tctctgacacaacaggtaaaccaagaacatattcaaccaaggagcgttgactataatttc
tcaaatgggagctttgaatcagttcaaaatctatctggagaaagtatatccgacagtgat
gatgattctgatgtctacataatagagcctaatggtcaatctgtaaacccgtatcgacct
ctagctatcaaaagcccggtggtttcttcacaatattcttcaagtggtcatacttttaat
caacctggaggcacgaggctccagtcaaacaaagaaaatatgatttttcaagctgcattg
caggatctctctctgcctgatgctgaagcaaatgttcctgatggtgtcttggcagttccg
cttatgagacatcagcgaattgcattgtcatggatgtccaataaggagacaactggcttc
ccctgttcgggaggaattcttgctgatgatcagggccttgggaagacaatttccaccata
gcactcatactaaaggaacggtctacaccttcccgaacatgtgaagaaagtatcaagaaa
gaagtttttgacttagaaagcgagggtggagaatgtgcgtcctcagaacctaatgaacag
agtgaacaagttgatggaaatagtgtggataaggtgaggggaaggccagctgctggaacg
cttgttgtctgtcccacgagtgttatgcgacagtggggtgatgaattacgcaagaaggta
actagtgaagcgaatctctctgtacttgtataccatgggtccagcagaacaaaggatcct
catgagttggctaaatatgatgttgtggttactacatattctatcgtgagcatggaagta
ccaaagcagcctcttgttgatgttgaggatgaagagaaggatgatttacataatggtgaa
ggagcagctggtgacctttgcccaaataagaaaaggaaatatcctcccgattctcaaaag
aagggctccaagaagaagaaacgtcttgatcgcgcatcagttgaggcccagtcgggccct
cttgcgaaagtttcctggttcagagttgttctggatgaggcacagagcattaagaatcac
aagacccaagttgcaagagcatgctggggccttcgtgctaaacggaggtggtgtttgtct
ggtactccaatccagaattcaattgatgacctctacagctacttccggttcctcaaatat
gatccttattcttcctacaatttgttctgtaattcaattaagaatcctgtagctaagacc
ccggtgagagggtatcagaagctgcaggctatccttaaaacagtgatgcttcgccgaact
aaaggttcacttattgacgggaaacccataatctccttacctccgaagtctatagagttg
agaaaagtggatttcactgaggaggaacgtgatttctacaccaacttagagagcgaatct
cgtagtcaattccaggaatacaaagaagccgggacagtaaagcaaaattatgtaaatatt
ttgttgatgctcttgcgtcttcgccaagcttgtgatcaccctcttctcgttaaaggtgaa
tacagttttacttgggaggcctcgctcggattagctaagaaggagaatttctcagaagct
tcattgcaaatttgtggtatctgcagtgattcacctgaggatgctgttgtgtcagtctgt
ggtcacgttttctgcaagcagtgcttttatgaatgcattacgggagatgacaatctatgc
ccgatggccaactgcaatggcagactctctgcgatgccttctatgcatgatagtgctact
tcggttcatgttgagactgctgactcttgttctgaaggtcttccatatgagtcatctaaa
atcaaggctgctctagagatcttacaatcacttgccagaccacaggatttgacagatatg
aagcagatatctcaaaagggagcggactctgtaacgccactcaaggttgttggagaaaaa
gccattgttttctctcagtggacaaagatgctggacctacttgaagcttctcttataagt
tcgcgtattcagtatagaaggctcgatggaacaatgtcagttgctgctcgcgacaaagca
gtgcaggatttcaacactctccctgaggttactgtaatgatcatgtcactcaaggctgct
agtctcggactgaacatggtagcagcgtgtcatgttctaatgctagacttgtggtggaac
ccaacaaccgaggatcaggctattgatagagcacatcgcataggacagacgcgaccagta
acagtggttcgattcacagtgaaagaaacagtcgaagatcgcatattagcccttcagcaa
aagaagagaatgatggtagcgtctgcatttggtgaagatgaaaagggaagccgacagtct
cacctcaccgtagaggacttgaactatctgtttatggcagattaa
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