KEGG   Raphanus sativus (radish): 108812820
Entry
108812820         CDS       T06014                                 
Name
(RefSeq) histone deacetylase 19
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03082  ATP-dependent chromatin remodeling
rsz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108812820
   03083 Polycomb repressive complex
    108812820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rsz03036]
    108812820
Enzymes [BR:rsz01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     108812820
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     108812820
   HDAC complexes
    Sin3A-HDAC complex
     108812820
    BRAF-HDAC complex
     108812820
    REST complex
     108812820
    SHIP complex
     108812820
    MiDAC complex
     108812820
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     108812820
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108812820
  Chromatin remodeling factors
   NuRD complex
    108812820
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 108812820
NCBI-ProteinID: XP_018440690
UniProt: A0A6J0JY55
LinkDB
Position
6:complement(2554796..2557931)
AA seq 505 aa
MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGI
DDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGIEVEDKMPEHEYYEYFGPDYTLHVAPSNMEN
KNSRQMLEVIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDADSDMDV
DDDRKPIPSRVKREAVESDAKDKDGGLKGVMERMKGFEMGGMEESGSTTKVTGGNSVGIE
EAGVKMEEDGTNKSGAASDQVFPKT
NT seq 1518 nt   +upstreamnt  +downstreamnt
atggatactggaggcaactcgctggcctctggaccagacggtgtgaagaggaaagtctgc
tacttctacgacccggaggttgggaactactactacggccaaggccacccaatgaagcca
caccggatccgcatgacccacgccctcctcgctcactacggtctcctccagcacatgcaa
gtcctcaaacctttccccgcacgtgaccgtgacctctgccgcttccacgccgacgactac
gtctccttcctccgcagcatcacgcccgagactcagcaggatcagatccgacagctcaaa
cggttcaacgtcggtgaagactgtcctgtctttgacggtctttactccttttgccagacc
tatgctggtggctctgttggtggatctgttaagcttaaccatgggctttgtgatattgct
attaactgggctggtggtctccatcatgctaagaagtgtgaggcttctggcttctgctat
gtcaatgacatcgtcctagctatccttgagctgcttaagcagcatgagcgtgttctctac
gttgatatcgacattcaccacggagatggagtggaggaagcgttttacgctactgacaga
gtcatgaccgtctcgttccataaatttggagattactttcccggcacaggtcacatacag
gacattggttacggaagtgggaagtactattcgctcaacgtaccactggacgatggaatc
gacgacgagagctatcatctcttgttcaagcccatcatggggaaagtgatggagattttc
agaccaggtgcggttgtgctgcagtgcggtgctgattctttgtctggtgataggctcgga
tgctttaacctctccatcaaaggtcatgccgagtgtgtcaagttcatgagatcgtttaat
gttccgttacttctcttgggtggtggtggttacactatccgtaacgttgctcggtgctgg
tgctacgagactggagttgcacttggaatcgaagttgaggacaagatgccggagcatgag
tactatgagtactttggtccagactatacgcttcacgttgctccgagtaacatggagaac
aagaactctcggcagatgcttgaagtgattcgtaatgacttgctccacaacctctcgaag
cttcagcatgctccgagtgtgccgtttcaggaaaggccaccagatacagagactcctgag
gtagatgaagaccaagaagatggagataaaagatgggatgcggattctgacatggatgta
gatgatgatcgtaaacctataccaagcagagtgaaaagagaagctgttgaatctgatgca
aaggacaaggatggaggactgaaaggagtaatggagcgtatgaaaggttttgagatgggg
ggtatggaggagagtggaagcaccaccaaggtaacaggaggaaactcagtgggaattgag
gaagcaggtgtgaaaatggaagaggatggcacaaacaagtcaggtgctgcatcagatcaa
gtgtttcctaaaacataa

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