Raphanus sativus (radish): 108812820
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Entry
108812820 CDS
T06014
Name
(RefSeq) histone deacetylase 19
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
rsz03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108812820
03083 Polycomb repressive complex
108812820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
108812820
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108812820
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
108812820
HDAC complexes
Sin3A-HDAC complex
108812820
BRAF-HDAC complex
108812820
REST complex
108812820
SHIP complex
108812820
MiDAC complex
108812820
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
108812820
Heterochromatin formation proteins
Other heterochromatin formation proteins
108812820
Chromatin remodeling factors
NuRD complex
108812820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
108812820
NCBI-ProteinID:
XP_018440690
UniProt:
A0A6J0JY55
LinkDB
All DBs
Position
6:complement(2554796..2557931)
Genome browser
AA seq
505 aa
AA seq
DB search
MDTGGNSLASGPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPFPARDRDLCRFHADDYVSFLRSITPETQQDQIRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGSVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYATDRVMTVSFHKFGDYFPGTGHIQDIGYGSGKYYSLNVPLDDGI
DDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGIEVEDKMPEHEYYEYFGPDYTLHVAPSNMEN
KNSRQMLEVIRNDLLHNLSKLQHAPSVPFQERPPDTETPEVDEDQEDGDKRWDADSDMDV
DDDRKPIPSRVKREAVESDAKDKDGGLKGVMERMKGFEMGGMEESGSTTKVTGGNSVGIE
EAGVKMEEDGTNKSGAASDQVFPKT
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggatactggaggcaactcgctggcctctggaccagacggtgtgaagaggaaagtctgc
tacttctacgacccggaggttgggaactactactacggccaaggccacccaatgaagcca
caccggatccgcatgacccacgccctcctcgctcactacggtctcctccagcacatgcaa
gtcctcaaacctttccccgcacgtgaccgtgacctctgccgcttccacgccgacgactac
gtctccttcctccgcagcatcacgcccgagactcagcaggatcagatccgacagctcaaa
cggttcaacgtcggtgaagactgtcctgtctttgacggtctttactccttttgccagacc
tatgctggtggctctgttggtggatctgttaagcttaaccatgggctttgtgatattgct
attaactgggctggtggtctccatcatgctaagaagtgtgaggcttctggcttctgctat
gtcaatgacatcgtcctagctatccttgagctgcttaagcagcatgagcgtgttctctac
gttgatatcgacattcaccacggagatggagtggaggaagcgttttacgctactgacaga
gtcatgaccgtctcgttccataaatttggagattactttcccggcacaggtcacatacag
gacattggttacggaagtgggaagtactattcgctcaacgtaccactggacgatggaatc
gacgacgagagctatcatctcttgttcaagcccatcatggggaaagtgatggagattttc
agaccaggtgcggttgtgctgcagtgcggtgctgattctttgtctggtgataggctcgga
tgctttaacctctccatcaaaggtcatgccgagtgtgtcaagttcatgagatcgtttaat
gttccgttacttctcttgggtggtggtggttacactatccgtaacgttgctcggtgctgg
tgctacgagactggagttgcacttggaatcgaagttgaggacaagatgccggagcatgag
tactatgagtactttggtccagactatacgcttcacgttgctccgagtaacatggagaac
aagaactctcggcagatgcttgaagtgattcgtaatgacttgctccacaacctctcgaag
cttcagcatgctccgagtgtgccgtttcaggaaaggccaccagatacagagactcctgag
gtagatgaagaccaagaagatggagataaaagatgggatgcggattctgacatggatgta
gatgatgatcgtaaacctataccaagcagagtgaaaagagaagctgttgaatctgatgca
aaggacaaggatggaggactgaaaggagtaatggagcgtatgaaaggttttgagatgggg
ggtatggaggagagtggaagcaccaccaaggtaacaggaggaaactcagtgggaattgag
gaagcaggtgtgaaaatggaagaggatggcacaaacaagtcaggtgctgcatcagatcaa
gtgtttcctaaaacataa
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integrated database retrieval system