Raphanus sativus (radish): 108821989
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Entry
108821989 CDS
T06014
Name
(RefSeq) trans-Golgi network-localized SYP41-interacting protein 1 isoform X1
Organism
rsz
Raphanus sativus (radish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Golgin_A5
IFT20
Motif
Other DBs
NCBI-GeneID:
108821989
NCBI-ProteinID:
XP_018450502
UniProt:
A0A6J0KRE3
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Position
8:complement(5195092..5201624)
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AA seq
1754 aa
AA seq
DB search
MHENDDDVPQDSSDSSVAADANENGNIPQDSADSVADDGIENEQERELDPDQMQETTAFV
DSKEDMFVDAPEELNIDTPIKGPALTTDDHDTNAKEEDREKELAVLQEHFNLLTAEKSDS
KVEEDGNNTVEILSRFSKFLETAEEEKIRHEDALKELRGVISGKDEEIANLTAKSSSSQD
EEQQLVAATDRILLSLSNVFGQEEPQHSGSSVSEKIAHLESGVAFLSAKYTEFYYGADQL
RKCLSSDEADLRFQEDFGSALGGACSQLLELKEKETSFHERLSHLEDENGKLVEQVNSDR
EMIESVTAESGKLKEELEQEKTRCINTKEKLSMAVTKGKALVQNRDALKHQISEKTTELE
NRLSELQEMKTALETCELLKGQLEQSLAEMADELEKRSTELRDKSVSLEACEVAKRELEQ
SLDEKTKELEECLVKLQALDEAELVKGELVKSEAMVASYQETVFSKSSIIENIETILSHI
NANSDEGQSLDIIEKVRSLAEEREELQNVSQEYNRLKDLIFSVDLPEEISESSLEARLTW
LRESFLQAKDEVSALQNQIERLSMSLSAEMEEKSSIRQELDDVTFRFKTLKETAERDSLE
REETVRKLVETSGVMTEGVEHHTVLVDRSLDQIVKKIRDSSEGSYGNEELFERFQSLLYA
SDVELSLCKEMLGEEMLACLQVNNLSSELASVKEEKTALETDLERSEEKSALLKDKLSMA
IKKGKGLVQDREKLKAQLDEKNSEIEKLMLELQELTGTVDSYKNQIDMLSGDSERTKELE
AELVAIKEERDELKQSLSLNDTLLQKVMRAVETMSIPVDLATEDSSEKIDRLVEYFKEVQ
QTRVEEQEELEKAKEEASKLAETLTALKLAEDTLSAAEGNIDRLAEENRQVQAAKELVEL
DLQKAVGEASSLSSELDEVCATRNTLEAALMQAERNISDIISEKEEAQSSTATAEMELEK
VKEEVSDQNNKLTEALITIKSLQDTLTQTESNMNSLSKQIEDDKVLTTDLKNELEALQNE
VELERSKMAEASLTIGSLEEALMKAENSLSVLQGEMVKAEVEKSTLSSKLNVCMEELAGS
NGNSQSKSMEIIAHLDNLQMALKDGGVISRVNEFLERKFKSLRDIDVIARDIILNFGEKG
LPVEMENVTEDDSTVAKSLLSGLDDSVDTELENSIENAADEDEISSSLRKITEGVKLKNK
ILEKNFEVSSTSIDTLFAALMENMTAARADVINVKGHNESLKEEVRSGEEIVREQEKTIA
ALETDLSALMSVCGEAARELQLEVKNDLLELVQFQENDNGGGETESTEHPQEILHVSECA
RGAKELSSATEKACTTLKLFETTSNAAAVLIRDMEERLKEASTALEKVVLERDLNQTKVS
SSEAKVESTEALCQDLKLQLENLKAEEEKWHEKEVELSRLYDKLQIQEQEAKENLIPASD
MRALFDKINGIEMPPSVDQANGLDPQRPYDVKKLLAIVDSVTKMQHQIDLLSHGQKDLNS
TLAEKDLEIQGLKEAAEAKDTTELELVKANKELSKLISGFEKLLGMLAGNDPAVDLDFSE
SWTLLQALERKIASLLLESESSKSRAQELGLKLVSSEKLVEKLAIKVEEFEDKLQSKAIQ
PDVVHERSIFEAPRVSSTSEISEMEDKGKKSISAVPTAAQVRVVRKASTDHLAINIDSES
EHLMNHNEADEDKGHVFKSLNMSGLVPTQGKMIADRVDGIWVSGGRVLMSRPQARLGVMV
YSLLLHLWLLASIL
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atgcacgagaatgatgatgatgttccgcaggattcgtctgattcttccgtagctgctgat
gcaaatgagaatggtaatattccgcaggactcggccgattctgtagctgatgatgggatt
gagaatgagcaagagcgagagcttgatcctgaccagatgcaggaaacaacagcatttgtt
gatagtaaggaagatatgtttgttgatgctcctgaggagttgaatattgatacacctatc
aagggaccagctctcaccacagatgaccatgacactaatgcgaaggaggaggatagggag
aaggaacttgcagtgttgcaggaacactttaacctcttgactgctgagaagagcgattcc
aaagttgaagaagatgggaacaacaccgtggagatcctcagtcgtttctctaagtttctg
gagactgccgaggaagagaagattcggcacgaggatgcactcaaggagcttcgaggggta
atcagtgggaaggacgaggagattgctaatctcaccgcaaagtcttcttcctcacaggac
gaggagcagcagctcgtggctgcaacagataggattctgctttctcttagcaatgtgttt
gggcaagaggagccgcagcatagcggctcctctgtctctgaaaagattgctcatctggag
agcggagttgcgtttttgagtgctaagtacaccgagttttactacggtgctgatcagctg
aggaagtgtttgtctagtgatgaggcggatcttcgtttccaagaggattttggttcggct
ctcggtggtgcttgctctcagttacttgagctcaaagagaaggaaacatcctttcatgaa
agacttagccatctagaagatgaaaacgggaaactggttgagcaggtgaacagcgataga
gaaatgattgagtcggtgactgcagagtctggtaaattaaaggaagagcttgagcaggag
aagacaaggtgtatcaacacgaaagagaagctcagcatggccgtaaccaaggggaaggcg
ttagttcagaaccgggatgctctaaagcatcaaatatctgagaaaacaacggagctcgag
aataggttgtctgaactacaagagatgaagactgcccttgaaacttgtgaattactcaag
gggcagcttgagcaatctttagctgagatggcagatgaacttgagaagcgctctactgaa
ctccgtgataagtctgtatccctggaagcatgtgaagtagcaaagagagagctggaacag
tctttagatgagaaaacaaaagaacttgaagagtgtttggtgaaactacaagcattggat
gaagctgaactcgtcaaaggtgagttagtaaaatccgaagctatggttgcatcatatcag
gaaacggtgttttcaaagagctcaatcattgaaaatatagaaaccatcttgtcacacatt
aatgctaactccgacgaaggtcagtctttagatatcattgaaaaggttagatcacttgca
gaagagagggaagagctccagaatgtttctcaggaatacaacagactaaaggatttgatc
ttttcggttgacttacctgaggagatctccgaatccagcttagaagctcgcctaacttgg
cttagggaatcatttttacaggcaaaggatgaagttagcgccctgcagaaccagatagaa
agattaagtatgtctctttcagcagaaatggaggagaaaagtagcattagacaggaactt
gatgatgtaactttcaggtttaaaacattgaaggaaactgcagagcgagattctttggaa
agagaggaaactgtgaggaagcttgtggaaacctctggcgtgatgacggaaggagttgaa
catcatactgttcttgttgatagatcgttggaccagatagtaaagaaaatcagggactct
agtgagggctcttatggcaacgaagagttatttgaaagatttcaaagtctcctttatgct
agtgatgtggagttgtcactttgtaaggaaatgttaggagaagaaatgctggcttgtttg
caggtaaacaatctctcaagtgaacttgcttcagtgaaagaagaaaaaactgctttggag
acggatcttgagaggtcagaggagaaatctgctttgctcaaagacaaactttccatggct
atcaagaaaggcaagggacttgttcaggatagggagaagttgaaagctcagctggatgag
aagaactcggaaatcgagaagctgatgctcgagttgcaggagttaactggtacggttgat
agctacaagaatcagatagatatgttatcgggagactcagagcgcacaaaggagctagag
gctgagcttgttgctatcaaggaagagagagatgaacttaagcagtctttatctctgaat
gacacgttgttgcagaaagtgatgagagcagttgaaactatgagtatacctgttgactta
gcaactgaggattcttcagaaaagattgacagacttgttgagtacttcaaggaagtgcag
cagactagagtagaggaacaagaagaactggaaaaggcaaaagaagaagccagtaaatta
gcagaaaccctcacagccttgaagttggctgaggataccttgtctgctgcagagggtaac
atagatcgacttgctgaggagaataggcaagtccaagctgccaaggagcttgtagaactt
gatctgcagaaagcagttggagaggcctcctctctgtctagcgagctggatgaagtttgt
gcaaccaggaatacacttgaagctgcactcatgcaggccgaaagaaatatatctgatatc
atcagtgaaaaggaagaggctcaaagcagtaccgctactgcagagatggagctagagaag
gttaaagaagaagtgtcagaccagaataacaaattaacagaagcacttatcaccataaaa
tcacttcaagatacacttactcagacagaaagcaacatgaattcactgtccaaacagatc
gaagatgacaaagttcttactacagatttgaagaatgaattagaggcgcttcaaaatgag
gtagagttagagcgtagcaagatggctgaggcttccttgacaataggatccctggaagag
gcactaatgaaggcggagaatagcctctctgtcttacaaggagaaatggtgaaagctgaa
gttgagaaatcaactctgagtagtaaacttaatgtgtgcatggaagagttagctggatca
aatggaaactcccagagcaaatctatggagattattgctcatcttgacaatctccaaatg
gcgctgaaggatggaggggtaatctccagggtgaatgagttccttgaaaggaagtttaag
agccttagagacattgatgtcattgctagagatatcattttaaattttggtgagaaggga
ttgcctgtggagatggaaaacgttacagaggatgattcaactgtggcaaagtccttgttg
agtggtcttgatgattcagtggatacggagctggagaatagcatagagaatgcagctgat
gaagacgaaatatcttcatcccttaggaagatcacagagggggtcaagctgaaaaacaaa
atactcgagaaaaacttcgaggtttcctcaacttccattgatacactctttgcggcgttg
atggaaaacatgacagcagcaagggctgatgtgataaacgtaaagggtcataacgagtca
ctgaaagaagaggtgaggagtggtgaagagattgttcgcgaacaagaaaagactatagct
gcattggaaacagatttgtcagctttgatgtctgtatgtggcgaggctgccagggaactg
cagttggaagtgaaaaatgacctcctagagttggttcagtttcaagaaaatgacaacgga
ggtggtgagactgaatcaactgaacatccacaagagattcttcatgtaagtgaatgcgcc
cggggagcaaaagagctatcttctgccacagagaaggcatgcaccactcttaagctcttt
gagacaacaagtaacgcagctgctgttctcatccgagatatggaagaaaggctaaaagaa
gcatctaccgctctagaaaaggttgtgttagaaagagatctaaaccaaaccaaggtttca
agttccgaggccaaggtggaatctacggaagcgctttgccaagatctgaaacttcagctg
gaaaatctcaaagccgaagaagagaaatggcatgagaaagaggtggaactctctagatta
tatgataaactgcagatacaagagcaagaagcaaaggagaacctaattccagcttctgat
atgcgtgctctttttgacaagataaatggtattgagatgcctccttcagtagatcaggcc
aatggattagatccacagagaccatatgatgtaaagaagctactcgcgattgttgatagt
gttactaagatgcagcatcagatagacctcttatcacatggacaaaaagatctcaactcc
accttggcagaaaaggatcttgaaattcaaggtctgaaggaggcagctgaagcaaaggat
acgaccgagctagagctagtgaaggcaaataaagaattgtccaagctaatatctggcttt
gagaaactgcttggtatgttggctggtaatgatcctgctgtagacctagacttctctgag
tcatggacactcttacaagcactagagaggaaaatagcttcccttctcctagaatcagag
agttcaaaatcaagggcgcaagaacttggtctgaagttagtcagcagcgaaaaacttgtg
gagaaattagcaataaaagttgaagaatttgaggataaacttcaaagcaaagccattcag
cctgatgttgttcatgaaaggagcatcttcgaagcaccaagagtatcttctacctcagag
atatcagagatggaggacaagggaaaaaaatcaatatcagctgtgcctacagcagcgcaa
gtgagagtggtgaggaaagcatcaacggatcatctagcaatcaacatagattcagagtcc
gagcatctgatgaaccacaacgaagcagatgaagataaaggacatgttttcaagtctctc
aacatgtctggtctagttccaacgcaaggaaagatgatagcagatcgtgtcgatggaata
tgggtctcaggtggaagagtattaatgagtcgtcctcaagcaaggcttggcgttatggtt
tacagtctcttgttgcatctgtggctcctagcttccatcttgtaa
DBGET
integrated database retrieval system
