KEGG   Raphanus sativus (radish): 108843970
Entry
108843970         CDS       T06014                                 
Name
(RefSeq) pre-mRNA-splicing factor 38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108843970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108843970
Spliceosome [BR:rsz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    108843970
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    108843970
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 108843970
NCBI-ProteinID: XP_018472645
UniProt: A0A6J0MJF5
LinkDB
Position
3:14555941..14558496
AA seq 349 aa
MANRTDPMAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHVGGT
FGGNRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGSDVDVYRYL
EPLYNDYRKVRQKLADGRFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGSLEPR
KSVLEDDFEEEEEKEENEGMADGSEDEKDHHRRSPERERDRDRDRDRRRDSHRHRDRDYD
RDYDMDRDYERERGRGGRDRDRERERDRDHYRDRDRERERGRDRERERARRRSRSRSRDR
KRHETDDREEPKKKKEKKEKMKEDGTDHPDPEIAEANRLRASLGLKPLR
NT seq 1050 nt   +upstreamnt  +downstreamnt
atggcgaaccgaacggatccgatggcgaagaacataagggggacgaaccctcagaacctg
gtggagaagatcgtgcggacgaaaatctaccagcacactttctggaaggagcagtgcttc
ggtctcacggcggagacgctcgtcgacaaggctatggagctagaccacgtcggtgggacc
ttcggcggtaaccgcaagcccactcctttcctttgccttatactgaagatgctccagatc
cagcctgagaaagagattgtcgtcgagttcatcaagaacgatgattacaagtatgttcgt
attctaggtgcgttttatctacgtctcactgggtctgatgttgatgtatatcgttacctc
gaacctctctacaatgactaccgtaaagtgaggcaaaagctggctgatgggaggttctcg
ttgacgcatgtggatgaagtcattgaggagcttttaaccaaggactattcttgcgatatc
gcaatgccacgcttgaagaaaaggtggacgcttgagcagaatggttctttagagccaagg
aagagtgttttggaagacgactttgaggaagaagaagagaaagaggagaatgaagggatg
gctgacggatctgaagatgagaaggatcaccaccgtaggagtcctgaaagagaaagagat
agggacagagacagagacaggagacgcgacagtcatagacacagggaccgtgattatgat
agagactatgacatggatcgagactatgaaagggaacgtgggcgtggtggtcgagacagg
gatagggagagggagagagacagagatcactatagggacagggacagggagagggaacga
gggagggacagagaaagagagagggcaaggcggaggagtagaagcaggagtagggatcgt
aagagacatgagactgatgatagggaggaaccaaagaagaagaaggagaagaaagagaag
atgaaggaagatggaacagatcatccggatcctgagattgcagaagccaatagactcaga
gcatctctgggactgaaacccttgagataa

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