Raphanus sativus (radish): 108843970
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Entry
108843970 CDS
T06014
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108843970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108843970
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108843970
Complex C
U4/U6.U5 tri-SnRNP related factors
108843970
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GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
108843970
NCBI-ProteinID:
XP_018472645
UniProt:
A0A6J0MJF5
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Position
3:14555941..14558496
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AA seq
349 aa
AA seq
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MANRTDPMAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHVGGT
FGGNRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGSDVDVYRYL
EPLYNDYRKVRQKLADGRFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGSLEPR
KSVLEDDFEEEEEKEENEGMADGSEDEKDHHRRSPERERDRDRDRDRRRDSHRHRDRDYD
RDYDMDRDYERERGRGGRDRDRERERDRDHYRDRDRERERGRDRERERARRRSRSRSRDR
KRHETDDREEPKKKKEKKEKMKEDGTDHPDPEIAEANRLRASLGLKPLR
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgaacggatccgatggcgaagaacataagggggacgaaccctcagaacctg
gtggagaagatcgtgcggacgaaaatctaccagcacactttctggaaggagcagtgcttc
ggtctcacggcggagacgctcgtcgacaaggctatggagctagaccacgtcggtgggacc
ttcggcggtaaccgcaagcccactcctttcctttgccttatactgaagatgctccagatc
cagcctgagaaagagattgtcgtcgagttcatcaagaacgatgattacaagtatgttcgt
attctaggtgcgttttatctacgtctcactgggtctgatgttgatgtatatcgttacctc
gaacctctctacaatgactaccgtaaagtgaggcaaaagctggctgatgggaggttctcg
ttgacgcatgtggatgaagtcattgaggagcttttaaccaaggactattcttgcgatatc
gcaatgccacgcttgaagaaaaggtggacgcttgagcagaatggttctttagagccaagg
aagagtgttttggaagacgactttgaggaagaagaagagaaagaggagaatgaagggatg
gctgacggatctgaagatgagaaggatcaccaccgtaggagtcctgaaagagaaagagat
agggacagagacagagacaggagacgcgacagtcatagacacagggaccgtgattatgat
agagactatgacatggatcgagactatgaaagggaacgtgggcgtggtggtcgagacagg
gatagggagagggagagagacagagatcactatagggacagggacagggagagggaacga
gggagggacagagaaagagagagggcaaggcggaggagtagaagcaggagtagggatcgt
aagagacatgagactgatgatagggaggaaccaaagaagaagaaggagaagaaagagaag
atgaaggaagatggaacagatcatccggatcctgagattgcagaagccaatagactcaga
gcatctctgggactgaaacccttgagataa
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