Raphanus sativus (radish): 108852115
Help
Entry
108852115 CDS
T06014
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108852115
03015 mRNA surveillance pathway
108852115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108852115
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108852115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108852115
NCBI-ProteinID:
XP_018481148
UniProt:
A0A6J0NBD2
LinkDB
All DBs
Position
1:complement(7462452..7465857)
Genome browser
AA seq
397 aa
AA seq
DB search
MAKPSRGRRSPSVSGSSSRSSSRSRSSPSRSVSRSRSRSRSLSSSSRSVSSGSRSPPPRS
KSSAGPARRGRSPPPQSKGASSPSKKATPIQESLVLHVDSLSRNVNEGHLKEIFGNFGEV
VHVELAMDRAVNLPKGYAYVEFKARADAEKAQLFMDGGQIDGSVVKAKFTLPPRQKVSPS
PKPVSSAPKREAPKSDSAGAADIEKDGPRRPRETSPQRKAVVSPRRRSPPPRRGASPRRL
PDSPPRRRPNSPIRRRGDTPPRRRAASPSSPPRRRRSPPRGSPRRIRGSPVRRRSPPPLR
RRSPPRRLRSPIRRSPIRRRSRSPIRRPARSRSRSISPRRGRGPAGRRGRSSSYSSSPSP
RRIPRKISRSRSPRRPLRGKRSSSNSSSSSSPPPRKT
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagtcgtggccgtcgttcaccgtccgtctccggttcttcttctcgttcc
agctccagatctcgttctagtccgtccaggtctgtttcgcgctcccgttcccgttccaga
tcgctctcttcttcttctcggagcgttagctctgggagtcgcagtcctccgcctcgttcc
aaaagttctgctgggcctgctagacgtggtcgctctcctcctccacagtctaaaggagcc
tcttcaccctctaagaaagctacacctattcaagaatcacttgttctccatgttgattct
ctcagcaggaatgtgaatgaaggccatctcaaagaaatatttggtaactttggtgaagtt
gtacacgtagaacttgccatggatcgagctgttaatcttccgaaaggatatgcttatgtt
gagttcaaggctagagctgatgctgagaaagctcagctgtttatggatggtggtcaaatt
gatggaagtgttgtcaaagcgaagttcacactaccaccgcgtcagaaagtatctccatcc
cctaaacctgtctcaagtgcaccaaaaagagaggctccaaaatctgatagtgctggtgct
gctgacattgagaaagatgggcccaggcgtccaagagagacttctccgcaacggaaagca
gtagtctctccaagaaggcgatcacctccgcctaggagaggcgcatcacctaggagacta
cctgattctccccctcgccggaggccaaactctcctatccgccgtcgtggtgatacaccg
cctagacgcagggctgcatcgccatcttctcctccaagacgacgtaggtctcctccaaga
ggctcccctagaagaatccgtggcagccctgttcgcagacggtctcctcctcctctaaga
cgaaggtcacctccaaggagactacgcagtcctataagaagatctccaatccgcagacgt
agccgatccccaattcgtagacctgctcgctctcgttcaaggtccatttcaccccgcagg
ggacgaggtccagctgggagacgtgggaggtcatcttcgtactctagttcgccaagtccc
agaaggattcctaggaagatttcaaggagccgcagtccaagaaggccactgagaggaaaa
agaagcagcagtaacagtagcagcagcagctcgccgcctcctcgcaaaacataa
DBGET
integrated database retrieval system
