Raphanus sativus (radish): 108855176
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Entry
108855176 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108855176
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108855176
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108855176
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108855176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
Helicase_C
SHPRH_helical-2nd
PHD
zf-C3HC4
zf-RING_UBOX
PHD_5
zf-RING_2
RNPP_C
TPR_10
TPR_2
zf-C3HC4_2
DUF2616
Motif
Other DBs
NCBI-GeneID:
108855176
NCBI-ProteinID:
XP_018484427
UniProt:
A0A6J0NK32
LinkDB
All DBs
Position
4:complement(41419436..41426623)
Genome browser
AA seq
1625 aa
AA seq
DB search
MGRRKQPKPQRSLGLITDEKRVFSGDEAEGSRRRKKKKKKNVEDIDKPYYVNVSSSSSSE
KQERQHFDIAEVVLLLTNLSSREDGVCSSSGSGLDCSLRFRICNVARSVDRIKLGHWPVL
SSSDVTLELVDDDREVPDGSVVWSGGFDGPGEGVSGLAHLVSMKFLTLRLVPGDEGFLLS
PRVRVELLQEAFDACESLLENTRQIWKRSMIHVMSWLRPEVMTSEARYGTLLTVRSAVTE
DETLDCSKQSRFDAAAFYEAIKPSKTDAMLEDDITDLLPELRPYQRRAAYWMVQRERGDP
ITLGDKEDNQFISPLSISIGFLDSASKMFFNPFSGNISLTPEYCSPRIPGGILADEMGLG
KTVELLACIFSHRKPDEEEETSVSNGSPVTDDLKTGLKRLKRERVECICGAVSESRKYKG
VWVQCDMCDAWQHADCVGYTPKGKSKKPIQEFDEKASQKKSKKDAAEVVVRQGEYICQMC
SELLQVTASPISTGATLIVCPAPILLQWHSEIKRHTRLGSLVTCIYEGVRNASLSEEPMV
DITELLNADIVLTTYDVLKEDLTHDGDRHDGDRHCLRFQKRYPVIPTPLTRISWWRICLD
EAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLYGLLRFLKANPFDVSRWWIEV
IRDPYERRDAKAMEFTHNFFKQVMWRSSKIHVADELQLPPQEECVSWLKFSAIEEHFYSR
QHETCVNYAREVIETLKCDILKRGHSSSDNPLITHAEAAKLLNSLLKLRQACCHPQVGSS
GLRSLQQTPMTMEEILMVLVKKTQSEGEEALRVLIVALNGIAAISMLKQEFSEAVSLYKE
ALNITEEHAEDFRLDPLLNIHILHNLAEILPLVQSHKSDIDVKDDDHHRAAKRQRINELD
SSTHVSSESGLKKDGEYHEECKTLDLVCDTLKVKYLSAFNLKLSAAQQEFTKSYHQVSES
LSNIGKQRSVWWLDVLQFAEQNKDFTTELTRKIEEAIHGSLNNSSSSREASRFRTIHGMK
LHLQTCMDTLESSRKTVMDKLLEIDQTMEKPRPEDIERIGNCKYCNKKEDGPTCIHCELD
ELFQAYEARLFRLNKSRGGVMEHASAEEVVDLQKKKSARNHFFFGLSSRNKDANQSSVDN
EEEPTKRNASDSVIVSKSPSETEVVLGVIRNHCKSYLDRESKLAATKHLQTLEVMRKEYV
HARVLARAQAHLLRAYDEIKMATMRLQLRESEDDTAIYALSLDELDAASVQNTNDKFLAQ
SSLLSIKGKLRYLKGLIETKQKQEESQDHSSPVEETAMASDPVGQESQNLLKREEACPIC
HENLRNQKMVFQCGHSTCCKCFFSMTERGSVHETMRKWVMCPICRQHTDVGNIAYADDRQ
NGYSSGQDHKENEASLAVQGSYGTKIEAVTRRILWIKSSDPQAKVLVFSSWNDVLDVLEH
AFAANGITFIRMKGGRKSQTAISKFKGTEKEVQRIQVLLLLVKDGANGLNLLEAQHVILV
EPLLNPATEAQAVGRVHRIGQDKPTLVHRFLVTGTVEDSIYKLNRSKNINVSSFSSRNTK
NQDQQNLTLRDLECLFASPPAEETEENEGGGQQNLRDLPPSVAAAMAAERRMNESNASTS
NANTS
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggagaaagcaacccaagccgcagcgttcgttgggattgatcacagatgaaaag
cgagttttttccggcgacgaggcagagggttctcgccggagaaagaagaagaagaagaag
aacgttgaagatatcgataagccgtattacgtgaacgtatcttcttcttcttcaagtgag
aagcaggagagacaacactttgatatagctgaagttgttcttcttctaactaatttaagt
tcaagagaagatggtgtgtgcagcagtagtggttctggtctggattgttcgttacggttt
cgtatatgcaatgtggctcgctctgttgatcggattaagcttggtcactggcctgtgttg
tcttctagtgatgtgactttggagttggttgatgatgatagagaggtgcctgatgggtcg
gtggtttggtctgggggttttgatggtccgggtgaaggcgtttcgggtcttgctcatttg
gtgagtatgaagtttttgactttgaggcttgtcccgggtgatgagggtttcttgttgtct
cctagagttagagttgagttgcttcaggaggcttttgatgcgtgtgagtctcttcttgag
aacacaagacagatatggaagaggagtatgattcatgtcatgtcttggttgaggccagag
gtaatgacatcagaagctaggtatgggacactattaaccgtgagatctgcggtgacagaa
gatgaaactctggactgtagtaaacaatctaggtttgatgctgctgctttttatgaagcc
ataaagccatcaaagactgatgcaatgcttgaagatgatataactgatttgctaccagag
cttaggccgtaccaacgacgtgcagcttattggatggtgcagcgagagagaggagatcca
ataactttgggagacaaagaagacaaccaattcatctcacctttgtctatatccattggg
tttcttgactctgcttcaaaaatgttctttaacccattcagtggaaacatctcattgaca
ccagagtattgttcacctcgaattccaggtggtatccttgctgatgagatgggattgggg
aaaacagttgaactacttgcttgcatcttttctcatcgaaaaccagacgaggaggaagaa
acatctgtgtctaatgggtcacctgtaactgatgatttaaaaactggattgaagagattg
aaaagggaacgtgtggaatgcatatgtggagctgtcagtgaaagtcgaaaatacaaagga
gtttgggtacagtgtgacatgtgtgatgcttggcagcatgcagactgtgtaggttataca
cctaaagggaaaagcaagaaacctattcaagaatttgatgaaaaagcatctcaaaagaag
agcaaaaaagatgctgcggaagttgtcgtcagacaaggcgaatatatttgccagatgtgc
tctgaacttctacaagtcactgcctctcccatctctacaggtgccactcttattgtctgt
ccagctcctatattacttcaatggcattccgagattaaacgccatacacgcttgggttct
ctggtgacatgtatctatgaaggtgtgaggaatgcctcactctccgaagaacctatggtg
gacatcactgaactcctcaatgctgacattgttttaactacatatgatgtcctcaaagag
gacttgactcatgacggcgacaggcatgatggtgaccggcattgtcttagattccagaaa
aggtatcctgttattcctactccactcaccagaatatcctggtggaggatttgcttggat
gaggctcagatggtggagagcaatgcagctgctgcaacagagatggctttgagattatat
actaaacaccgttggtgtattaccggaactcctatacaacgcaaacttgatgacttatat
ggactattaaggttccttaaagctaatccttttgatgtttcaagatggtggattgaagtt
ataagagacccatatgagaggagagacgcaaaggccatggagtttactcataattttttc
aaacaagttatgtggcgttcttcaaaaatccatgtggctgatgagttgcaacttccacct
caagaagaatgcgtttcatggctcaaattctccgcgatcgaagaacacttttatagcagg
cagcatgagacttgtgtgaattatgcccgtgaagttatagaaactttgaagtgtgatatt
ctcaaaagaggtcatagctcttctgataatcctttaatcactcatgccgaagctgcaaaa
ctgttgaactcgctcttgaaactgcgccaagcttgctgccaccctcaagtagggagttct
ggtttacgttcgctgcaacaaacgccaatgaccatggaagagattctaatggtccttgtg
aaaaagactcagagcgagggtgaagaagctcttagagtgttgattgttgctttaaatggg
attgctgctatttctatgcttaagcaagagttttctgaagcggtatcgttatacaaggaa
gcattaaacataactgaagagcacgccgaagattttcgtcttgatccattgttgaacatt
catattcttcacaatctagctgagatactaccactggtccaaagccacaaaagtgacata
gatgtgaaagatgacgatcatcatcgtgcagccaaaaggcaaaggatcaatgagctcgac
agttcaactcatgtttcttcagaaagtggtttaaagaaggatggagagtatcatgaagag
tgcaaaactctggatctagtttgtgacacattgaaagttaagtatttatccgcattcaac
ttaaagctctctgcagcacagcaggagttcacaaaatcttaccatcaggtttccgagtcg
ttgagcaatatagggaaacaacgttcggtttggtggttagatgtcctacaatttgctgaa
cagaacaaagatttcaccaccgagttgaccaggaagattgaagaggccatccacggaagc
ctaaacaattcaagctcctccagagaagcttctcgctttagaaccatacatgggatgaaa
cttcatctgcagacctgtatggatacgctggaaagctcaagaaaaacagtaatggataag
cttttagagattgaccagactatggagaaaccaagacctgaggatattgagcgtattggt
aactgcaagtattgtaacaagaaagaggatggccctacttgtattcattgtgagctggat
gaactattccaggcatatgaggctaggctattccgtcttaacaaatctcgtgggggagta
atggaacatgcatctgccgaagaggtagtagatctacagaagaagaaatctgctcgtaac
catttctttttcggtttgtcgtcgagaaacaaggatgcaaatcaatcatctgttgataac
gaagaagaacccaccaaaagaaatgctagtgactccgttatagtttcaaaatctccatct
gagacggaagtagttcttggtgtaataagaaaccattgcaaatcttatttagacagggag
agcaaattggcagccacaaaacatttacaaacccttgaggtgatgaggaaggaatatgta
catgcaagggtcttggctagggctcaagctcacctcctgcgtgcctatgatgagattaag
atggcgacaatgagactacagcttagagaatctgaagatgacacggccatttatgctttg
agccttgatgagttagacgctgcgagtgttcagaacacaaatgataagtttttggcgcag
tcttcattgcttagtataaaagggaagcttcgttatctgaaggggttgatagaaaccaaa
cagaaacaagaagagagtcaagatcactcctcaccagtagaggaaacagctatggcttca
gatcctgttggacaggaaagccaaaaccttctaaagcgagaggaagcatgtccgatttgt
catgagaacctacgaaatcagaagatggttttccagtgtgggcacagcacttgctgtaaa
tgctttttctccatgacggagcgcggttcagttcacgagactatgcgaaagtgggtcatg
tgtccaatatgtaggcaacatacagacgttgggaatattgcgtatgctgatgacagacaa
aacggttattcgtcaggtcaagaccacaaagaaaacgaagcatcattagctgttcaaggt
tcatatggaacaaagattgaagctgttactagaagaatcttatggatcaagtcaagtgac
ccacaagcgaaggttcttgttttctccagctggaacgatgttcttgatgtgttggaacat
gccttcgctgccaacggcatcactttcatccggatgaaaggaggaaggaaatcacagacg
gccattagcaaattcaaggggacagagaaagaagtccaaaggatccaagtcctactgctt
ttggtgaaggatggtgccaatggccttaatcttctggaagcacagcatgttattctagtg
gagccgcttttaaacccagctacagaggcgcaagctgttgggcgtgttcaccggataggg
caagacaagcctactctagttcatcgattcctggtaacgggtacagtggaagacagcatc
tacaagctgaacaggagtaagaacataaacgtaagctcatttagcagcaggaatacaaag
aatcaagatcaacagaatctgacactgagagacctcgagtgtctatttgcttcaccacca
gcagaagagacagaagaaaacgagggaggtgggcagcagaatctgagagatctaccgcca
tcagtcgctgcagctatggcagccgagaggagaatgaatgaaagtaatgcctcaacatca
aatgcaaacacatcatga
DBGET
integrated database retrieval system
