Ramlibacter tataouinensis: Rta_01330
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Entry
Rta_01330 CDS
T01544
Symbol
recQ1
Name
(GenBank) Candidate ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rta_01330 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rta03019
]
Rta_01330 (recQ1)
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_01330 (recQ1)
Enzymes [BR:
rta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rta_01330 (recQ1)
Messenger RNA biogenesis [BR:
rta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rta_01330 (recQ1)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rta_01330 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
AEG91196
UniProt:
F5Y3A9
LinkDB
All DBs
Position
complement(129805..131670)
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AA seq
621 aa
AA seq
DB search
MQAPLSILREVFGYEQFRGPQAAIVEHVIAGGDALVLMPTGGGKSLCYQVPAIARQRAGH
GITVVVSPLIALMHDQVGALHEAGVEAAFLNSTLSGEEAAGVEKRLLRGEVTLLYAAPER
VTTPRFLAQLDSLHQRGQLALFAIDEAHCVSQWGHDFRPEYRALTVLHERFAGVPRIALT
ATADALTRADIVERLQLEDAREFVSSFDRPNISYTIVEKKDPTLQLLRFIEGEHAGEAGI
VYCQSRKRVEETAQTLSGQGLTALPYHAGLDTEVRQRHQDRFLREDGIVMVATIAFGMGI
DKPDVRFVAHLDMPKNIEGYYQETGRAGRDGLPAAAWMAYGLQDVVNQRRMIDESPAGED
FKQVMRGKLDALLALAEATDCRRVRLLGYFGEDSRPCGNCDNCVSPPQVWDGTDAARKLL
STIYRVQQASGISFGAGHIMDILRGKATEKVKQFGHDRVSTFGLGADFSEAQLRGVLRQL
IATGALAVDAQAFNTLQLTEGSRAVLKGEQAVMLRETVAAPSGGRRRAAAGSRSAPPAVA
AGLTDAGQARFTALKAWRGEVARAHNLPAYVIFHDATLAAIAAQAPRSLEDLQGISGIGA
KKLEAYGSEVLRVVAQAPAGT
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagccccgctttccatcctccgcgaagtcttcggctacgagcagttccgcggcccg
caggcggccatcgtcgagcacgtcatcgccggcggcgacgcgctggtgctcatgcccacc
ggcgggggcaagtcgctgtgctaccaggtgccggcgatcgcccgccagcgggccggccac
ggcatcacggtggtcgtgtcgccgctgatcgcgctgatgcacgaccaggtgggcgcgctg
cacgaggccggggtggaggcggcgttcctcaattccacgctcagcggcgaggaagccgcg
ggggtggaaaagcgcctgctgcgcggcgaggtcacgctgctgtacgccgcgcccgagcgg
gtcacgacgccgcgcttcctggcgcagctcgattcgctgcaccagcgcggccaactggcg
ctgttcgccatcgacgaggcgcactgcgtcagccagtggggccacgacttccggcccgag
taccgggcgctcaccgtgctgcacgagcgcttcgccggcgtgccgcgcatcgcgctcacg
gccacggccgacgcgctgacccgggccgacatcgtcgagcggctgcagctggaggatgcc
cgcgagttcgtcagcagcttcgaccggcccaacatctcctacaccatcgtcgagaagaag
gacccgacgctgcagctgctgcgcttcatcgaaggcgagcacgccggcgaggccggcatc
gtctactgccagtcgcgcaagcgcgtggaggagacggcgcagaccctcagcgggcagggc
ctcaccgccctgccctaccacgccggcctggacaccgaggtgcgccagcgccaccaggac
cgcttcctgcgcgaggacggcatcgtgatggtggccaccatcgccttcggcatgggcatc
gacaagcccgacgtgcgcttcgtcgcccacctggacatgcccaagaacatcgagggctac
taccaggagaccgggcgggccggccgcgacggcctgcccgccgccgcctggatggcctac
gggctgcaggacgtggtgaaccagcgccgcatgatcgacgagagcccggccggcgaggac
ttcaagcaggtgatgcgcggcaagctggacgcgctgctggcgctggccgaggccaccgac
tgccggcgggtgcggctgctgggctatttcggcgaggacagccggccctgcggcaactgc
gacaactgcgtctcgccgccccaggtctgggacggcaccgacgccgcgcgcaagctgctg
tccaccatctaccgggtgcagcaggccagcggcatcagcttcggcgcgggccacatcatg
gacatcctgcgcggcaaggccaccgagaaggtcaagcagttcggccacgaccgggtcagc
accttcggcctgggcgccgatttcagcgaggcgcagctgcgcggggtgctgcgccagctg
atcgccaccggcgcgctggcggtggacgcgcaggccttcaacacgctgcagctgaccgag
ggctcgcgcgcggtcctcaagggcgagcaggccgtgatgctgcgcgaaaccgtggcagcg
ccctccggcggccggcgccgcgccgcggcgggcagccgctccgccccgccggctgtggcc
gccggcctcaccgacgccggccaggcgcgcttcacggcgctgaaggcctggcgcggcgag
gtggcgcgggcgcacaacctgccagcctacgtcatcttccacgacgccaccctggcggcc
atcgcggcccaggcgccgcgcagcctggaggacctgcagggcatcagcgggatcggcgcc
aagaagctggaggcctacggcagcgaggtgttgcgggtggtggcacaggcgccggcggga
acttga
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