Ramlibacter tataouinensis: Rta_20930
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Entry
Rta_20930 CDS
T01544
Symbol
ligC
Name
(GenBank) Candidate DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rta
Ramlibacter tataouinensis
Pathway
rta03030
DNA replication
rta03410
Base excision repair
rta03420
Nucleotide excision repair
rta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rta_20930 (ligC)
03410 Base excision repair
Rta_20930 (ligC)
03420 Nucleotide excision repair
Rta_20930 (ligC)
03430 Mismatch repair
Rta_20930 (ligC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rta03032
]
Rta_20930 (ligC)
03400 DNA repair and recombination proteins [BR:
rta03400
]
Rta_20930 (ligC)
Enzymes [BR:
rta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rta_20930 (ligC)
DNA replication proteins [BR:
rta03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rta_20930 (ligC)
DNA repair and recombination proteins [BR:
rta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rta_20930 (ligC)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rta_20930 (ligC)
MMR (mismatch excision repair)
DNA ligase
Rta_20930 (ligC)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rta_20930 (ligC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AEG93187
UniProt:
F5XYL1
LinkDB
All DBs
Position
complement(2209352..2211451)
Genome browser
AA seq
699 aa
AA seq
DB search
MTTSPTVRERIDALRELLHHHAHRYYVLDDPEIPDAEYDRLLRELQALEEEHPELLTPDS
PTRRVGGKPLEGFAKVRHKVPMLSIRTETDIEATGARNFDARVRRELGLAEADPPVEYVA
ELKFDGLAVNLRYEHGRLVQAATRGDGQVGEDVTQNIRTIGQVPLQLQGRDAPAVLEVRG
EVYMRRDDFEELNEQQREKIARGAKNEKTFVNPRNAAAGAVRQLDPAITRQRPLSFYAYG
WGEITPPEQGGPAFETHHQVLQALKAWGLPLSSRTRVAQGADELIAYHQEVGRIRDQLPF
DIDGVVYKVNSLALQRRLGFVTREPRWAVAHKFPAQEQLTTVESIDVYVGRTGKLTPVAR
LAPVFVGGVTVTNATLHNEDEARRKDVRMGDTVIVRRAGDVIPEVVAVVVDKRTHASPPF
AMPSRCPVCGSEAVREEGEVDHRCTGGLFCGAQRKQALLHFAQRRAMDIEGLGEKLVDQL
VDGGVIKTLPDLYRMGLASLTALERMGEKSAQNLLAGLERSKSTTLPRFLFALGIRHVGE
STARDLARHFGRLHAIMDAGVDQLLQVPDVGPVVAESIHTFFQQPHNREVVEQLQKPPPD
GCGVHWEETEPAAAAVLPLAGKTVVLTGTLPTLGREEAKELLEAAGAKVAGSVSKKTSYV
VAGAEAGSKLDKARELGVPVLDEDGLRALLQAPPGRAGV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgagccccacggtgcgcgagcgcatcgacgcgctgcgcgagctgctgcaccac
catgcccaccggtactacgtgctggacgacccggagatcccggacgccgagtacgacagg
ttgctgcgcgagctgcaggcgctggaggaggagcaccccgagctgctcacgccggattcg
ccgacccggcgcgtgggcggcaagccgctggagggttttgccaaggtgcggcacaaggtg
cccatgctgtccatccgcaccgagaccgacatcgaggccaccggggcgcgcaacttcgac
gcccgggtgcggcgcgagctggggctggccgaggccgacccgccggtggagtacgtggcc
gagctcaagttcgacgggctggccgtcaacctgcgctacgagcacggccggctggtgcag
gccgccacccgcggcgacggccaggtgggcgaggacgtgacgcagaacatccgcaccatc
ggccaggtcccgctgcagctccagggccgcgacgcgccggcggtgctggaggtgcgcggc
gaggtctacatgcgccgcgacgatttcgaggaactcaacgagcagcagcgcgagaagatc
gcgcgcggcgcgaagaacgagaagaccttcgtcaacccgcgcaacgccgcggccggtgcg
gtgcgccagctggacccggcgatcacgcgtcagcggccgctgtccttctacgcctacggc
tggggcgagatcacgccgcccgagcagggcggcccggccttcgaaacccaccaccaggtc
ctgcaggcgctcaaggcctggggcttgccgctgtcctcccgcacccgggtggcccagggc
gcggacgaattgatcgcctaccaccaggaggtggggcgcatccgcgaccagctgccgttc
gacatcgacggcgtggtctacaaggtcaacagcctggcgctgcagcgccggctcggcttc
gtcacgcgcgagccgcgctgggcggtggcccacaagtttccggcgcaggagcagctgacc
acggtggagtccatcgacgtctacgtcgggcgcaccggcaagctcacgccggtggcgcgc
ctggcgcccgtgttcgtggggggcgtgacggtcaccaacgccaccctgcacaacgaggac
gaggcccggcgcaaggacgtgcgcatgggagacaccgtcatcgtgcgccgcgccggcgac
gtgatcccggaggtggtggcggtggtggtcgacaagcgcacccatgcctcgccgcccttc
gcgatgcccagccgctgcccggtgtgcggcagcgaggcggtgcgcgaggaaggggaggtc
gaccaccgctgcaccggcgggctgttctgcggcgcccagcgcaagcaggcgctgctgcat
ttcgcccagcggcgcgcgatggacatcgaaggcctgggcgagaagctggtggaccagctg
gtcgacggcggcgtcatcaagaccttgcccgacctgtaccgcatgggcctggcgagcctg
acggccctggaacgcatgggcgagaaatccgcccagaacctgctggccgggctggagcgc
tccaaatcgaccacactgccgcgcttcctgttcgccctgggcatccggcacgtgggcgag
tccaccgcacgcgacctggcccgccacttcggccggctgcacgccatcatggacgccggc
gtggaccagctgctgcaggtgcctgacgtcggcccggtcgtggccgagagcatccacacc
ttcttccagcagccgcacaaccgcgaggtggtggagcagctgcaaaaaccacctcctgat
ggttgcggcgtgcactgggaggagactgagccggccgcggcggcggtgctgccgctggcc
ggcaagaccgtggtgctgaccggtaccctgcccacgctcggccgcgaggaggccaaggaa
ctgctggaggccgcgggcgccaaggtggcgggctcggtcagcaagaagaccagctacgtg
gtggccggggcggaggcgggcagcaagctggacaaggcgcgcgagctgggcgtgccggtg
ctggacgaggacggcctgcgcgccttgctgcaggcgccgcccggccgagccggggtctag
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