Rissa tridactyla (black-legged kittiwake): 128900337
Help
Entry
128900337 CDS
T09443
Symbol
SOX13
Name
(RefSeq) transcription factor SOX-13 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rtd03000
]
128900337 (SOX13)
Transcription factors [BR:
rtd03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
128900337 (SOX13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
CREPT
Motif
Other DBs
NCBI-GeneID:
128900337
NCBI-ProteinID:
XP_054037329
LinkDB
All DBs
Position
21:4144389..4185032
Genome browser
AA seq
624 aa
AA seq
DB search
MEVAAFRGSAADRMSMRSPVSPHLELDGAGSMVNCTIKTEEKKEGGYESPPGAAPSTEPR
PSDPPGPPPREGTDPQALPQESRSPASDAPEPRRSAFEPAVGSQEKLDFNRNLKEVMPTI
EKLLSSDWKERLLGRNTADSKEVKGTQESLAEKELQLLVMINQLSTLRDQLLTAHSEQKN
MAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFTPS
HQPLPVTPDSQLALPIQPIPCKPVDYPVQLLHSPPPPTLKRPAGSGHLQMQETSQPLNLT
AKPKGSDLPSASSSPSLKMSGCQSLTPNHGATRDLQTSPSNLPLGFLGEGDAITKAIQDA
RQLLHGHSGAMEGSLTNAYRKDHVGIDSSPVKERMEETPAHRLDEALLSCEMDGSRHFPE
SRNNNHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQ
ARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRNRRQDARQGYLIGPQGSQM
PPASSDVLYQRPVGMQLTPPLMEHYLPRGMDPSMPVIVNTRSLKEGDGADDGHSVADGEM
YRYSEEEDSEGEDKSDGELVVLTD
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgcggctttccgtgggagcgccgccgacaggatgtccatgaggagccccgtt
tctccccacctggagctcgatggagcgggcagcatggtgaactgcaccatcaagacggag
gagaagaaggagggcggctacgagtccccgccgggggctgcccccagcactgagccccgt
cccagcgacccaccggggccaccgccgagggagggcaccgacccccaggccctgccgcag
gagtcccgctcgcccgccagcgacgcgccggagcccaggcgctctgccttcgagccggct
gtcggcagccaggagaagctggacttcaacaggaacttgaaggaggtgatgccaaccatc
gagaaattactgtccagcgactggaaggagcggctgctgggccgaaacaccgccgactcc
aaggaagtgaaaggaacccaggagagcctggcagagaaggagctccagttacttgtcatg
atcaaccagctgtccacgctgcgggaccagctcctgacggcccactcggagcagaagaac
atggccgcgatgctcttcgagaagcagcagcagcagatggagctggcgcggcagcagcaa
gagcagatcgccaagcagcagcagcagctcatccagcagcagcacaaaatcaacctcctg
cagcaacagatccagcaggtcaacatgccctacgtcatgattcccgccttcacccccagc
caccagcctctccccgtcactcccgactcccagttagcgctgcccatccagcccatcccc
tgcaaaccagtggattacccagtgcagctgcttcacagcccccctcctcccacgctgaag
agacccgccggctcgggccacctccagatgcaggagacctcgcagccgctgaacctgacg
gccaaacccaaaggttccgacctccccagtgcctccagctcgcccagtttgaagatgagc
ggctgccagtccctcacgccgaatcacggggccaccagggacctgcagaccagcccgtcc
aacctgcctctgggattcctgggcgaaggcgacgccatcaccaaagccatccaggacgcg
cggcagctgctgcatggccacagcggagccatggaggggtcactgaccaacgcctatcgc
aaggaccacgttgggattgattcttccccagtgaaggagcggatggaggagacccctgcc
caccggctggacgaggctctgttgagctgtgagatggacggctcacggcacttcccggaa
tccaggaacaacaaccacatcaagcggcccatgaatgccttcatggtgtgggcgaaggac
gagaggaggaagattttgcaggccttcccagacatgcacaactccagcatcagcaagatc
ctgggctcccggtggaaatccatgacgaaccaggagaagcagccctactacgaggagcaa
gcccggctgagccggcagcacctggagaaataccccgactataagtacaagccccgaccc
aaacgcacctgcatcgtggaggggaagcggctgcgtgtgggcgagtacaaggcgctgatg
aggaaccggcggcaggacgccaggcagggctacttgatagggccccagggcagccagatg
ccccccgcctcctcggacgtgctgtaccagcggccggtggggatgcagctgacgcccccc
ctgatggagcactacctgccccgcggcatggaccccagcatgcccgtcatcgtcaacacc
cgcagcctcaaggagggtgacggcgctgacgacgggcactcggtggccgacggcgagatg
taccgctacagcgaggaggaggactcggagggcgaggacaagagcgacggcgagctggtg
gtgctgacagactga
DBGET
integrated database retrieval system
