Rissa tridactyla (black-legged kittiwake): 128902475
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Entry
128902475 CDS
T09443
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
rtd
Rissa tridactyla (black-legged kittiwake)
Brite
KEGG Orthology (KO) [BR:
rtd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtd03041
]
128902475 (YTHDC2)
Enzymes [BR:
rtd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128902475 (YTHDC2)
Spliceosome [BR:
rtd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
128902475 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
Ank_2
AAA_19
HA2_N
nSTAND3
AAA_22
ATPase
Ank_4
PhoH
AAA_23
AAA_7
SRP54
AAA_29
AAA_16
AAA_30
ResIII
T2SSE
Motif
Other DBs
NCBI-GeneID:
128902475
NCBI-ProteinID:
XP_054041563
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All DBs
Position
Z:complement(23430056..23463697)
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AA seq
1434 aa
AA seq
DB search
MSRPNSVSPRQPGAASGVSGNPAGAASAAPAAGRGRGKGLKDIRVDEEVEIAVNLALERF
RYGEEREMEFPSSFTSTERAFVHRLCQSLGLISKSKGKGANRYLTVRKKDGSELTRAVMT
CCLAPSTKHAIRSLIQRFPVTNKERTELLPKTERGNSCAVESENREVNKTSGRLNNGIPQ
VPVKRGESEFDSFRQSLPVFEKQEEIVRIIKDNKVVLIVGETGSGKTTQIPQFLLDDCYK
NGTPCRIFCTQPRRLAAVAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGIL
LRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLIKLRNVLQKQTNLKLIISSAALDADLF
IRYFGSCPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQREEKQQSTLTEWCS
AQENNSKLESQRERSVPSTTEEDNLLDDGGDTLFNQLTEKDANCLEPWLIKEMDSCLSDI
WLHKDVDSFAQVFHLILTENVSVDYRHSETSVTALMVASGRGFLSQVEQLISMGASIHCK
SSNGWMALDWAKRFGQTEVVDLLESYSASVESGNLDESSLVQTSDSDLSAEDRELLKAYH
HSFDDEKVDLDLIMHLLYNICHSCEAGAILIFLPGYDEIVSLRDRILFDDKRFADSAHRY
QVFMLHSNMQTLDQKRVLKSPPPGVRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFDA
LSCVTMLKMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFQNMLEFQTPELLRMPLQEL
CLHTKLLAPINCSIVDFLTKAPDPPPALIVRNAVQMLKTIDAMDPWEDLTELGYHLTELP
VEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPALASQKRAAMLCRKRFTAGTFSD
HMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIVIGMRTQLLGQLRASGFVRARGGA
DIRDVNTNSENWAVVKAALVAGMYPNLVHVDRESLVLTGPKEKKVRFHPTSVLSQPQYKK
IPPANGQAAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVALFCGPARLPSNALQE
PSSFRGDGISNDNSDSEMEDKTTANLALLKLDEWLHLKLDPEAACLLLQLRQKWHSLFLR
RMRAPSKPWSQVDETTVRAIVAVLSAEEQSAGLQQPSGIGQRPRPMTCEDLPSASTWRSA
NSRKSSAETEFSDDSSNAEKLLMKSTPPTLHQPKKYKEKNILHSKRTSDDRSDQSSVKST
DSSSYPSPCASPSSPISGKGSKSPSPRPNMPVRYFIMKSSNLQNIDISQQKGIWSTTPSN
ERKLNRAFWESSMVYLVFSVQGSGHFQGFARMASEIGCEKSQDWGSAGFGGVFKVEWIRK
ESIPFHFAHHLLNPWNDNKKVQISRDGQELEPQVGDQLLQLWDRIPLAGKSSSD
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcccaacagcgtctccccgcggcagcccggcgcggcgtcgggggtctcgggt
aaccctgccggggccgcctcggccgcccccgcggcaggccgcggcagaggcaaggggctg
aaggatatccgcgtcgacgaggaggtggagatcgcggtgaacctggctctggagcggttc
cggtacggagaggagagagaaatggaatttccttcttctttcactagtactgaaagagca
tttgttcaccggctctgtcagtctcttggactgatatctaaaagtaaaggaaaaggagca
aatcgatatctgaccgtaaggaagaaggatggatcagaactaacacgtgcagtaatgact
tgttgcttggctcccagtacgaaacatgcgattcggagtttaattcagagatttcctgtc
acaaataaagaacgaacagaacttctgccaaagacggagcgaggaaattcgtgtgctgtt
gagtctgaaaacagagaagtgaacaagacaagcggacgacttaacaacggcatcccccag
gttccagtgaaaagaggggaatcagagtttgattccttcaggcaatcactaccagttttt
gaaaaacaggaagaaattgtcagaataataaaggacaataaagttgttttgattgtagga
gagactggatcaggaaaaactactcaaatccctcagttccttcttgacgactgttacaaa
aatggaactccctgtcgtatattttgcactcagccaagacgtttggcagctgttgctgtg
gcggaaagagtggcagcagaaagaagagaaaagattgggcagacaattggttaccagatc
cgattagaaagcagggtttctccaaagacactgttaacgttttgcactaatggcatactg
cttcgcacactaatggcaggagacagcactctatcaacagtgacacatgttattgtggat
gaagtacatgagagggacaggttcagtgacttcctgttaataaaactgagaaatgtgttg
caaaaacagactaatctaaaactaattatttctagtgctgctctagatgcagatctcttt
attaggtattttgggagttgcccagtaatacacatacaaggaagaccttttgaagttaaa
gagatgtttttggaggacattttacgaagcactgggtatacaaacaaagagatggtaaag
tacaaaaaagagaaacagagagaagagaaacagcaaagcactcttactgagtggtgttct
gctcaagaaaataatagcaaactggaatctcagagagaaagatctgtcccaagtacaact
gaagaggataatctgttggatgatggtggtgacacgttatttaatcaactgactgaaaaa
gatgcaaattgccttgaaccatggctaataaaagaaatggattcttgtctttctgacatc
tggttgcataaagatgttgattcctttgctcaggtgttccatctcattttaactgaaaac
gtcagtgttgattataggcacagtgaaaccagtgtgactgcactaatggttgcttcaggg
agaggatttctgagtcaagtggaacaactgatcagtatgggagcaagtatccactgcaaa
tcatccaatggctggatggctttggactgggctaagcgctttggacagacagaggttgtt
gacctgttggagtcctacagtgcttcagtggaatctggaaatctggatgaaagttccctg
gtccaaacaagcgatagtgaccttagtgcagaggacagagaactgttgaaagcttaccat
cacagttttgatgacgaaaaagtggatctggacctgattatgcacttactttataacatc
tgtcatagttgtgaagctggagctattttaatatttcttcctggatatgatgagatagtt
agcctgagggaccgcattctttttgatgacaagagatttgctgatagtgctcacagatac
caggttttcatgcttcattcaaatatgcagactttggatcagaagagggtgcttaaaagt
ccacctcctggcgtccgcaaaataattctttctactaatattgcagaaaccagcataaca
gtcaatgatgttgtgtttgttattgactcaggcaaaatgaaagagaagtcttttgatgca
ctaagttgtgttacaatgctaaaaatggtgtggatttcaaaagccagtgctatccagaga
aaaggcagggcagggcgctgtcagccgggagtctgttttcgtctcttcagcaggctccga
tttcagaatatgttggaatttcagactccagaacttctaagaatgccacttcaggagctt
tgtttacacacaaaacttctggctccaattaactgttcaattgtcgactttcttacgaaa
gctcccgatcctccaccagctttaattgtgagaaatgctgtgcaaatgcttaagacaata
gatgccatggacccttgggaagatcttactgaacttggttatcatctcactgaattacca
gtagagccacaccttggtaaaatggtgttgtgtgctgttgttttgaagtgcctggatcct
attcttactattgcttgcactcttgcatatcgagacccttttgtcctgcctgcactggcc
tctcaaaagcgggcagccatgctgtgtagaaaacgttttactgcaggaacgtttagtgac
catatggcgcttctcagggctttccaggcatggcagaaggcacgcagtgatggctgggag
agagccttctgtgaaaagaactttctgtctcaagccacgatggaaatcgtcataggaatg
agaacacagttgcttggccagcttagagcctcaggttttgttagagccagaggaggagct
gatattagagatgttaatactaactctgagaactgggctgtagttaaagctgccttagtg
gctgggatgtatcccaatctagtgcatgtagacagagaaagcctggttttgactggaccg
aaggagaagaaagtgcgatttcatcctacctctgttcttagtcaacctcagtataaaaag
attcccccagcaaatgggcaagctgcagctgttcaggcactccctacagactggcttata
tatgatgaaatgacgagagctcacagaatagcaaatatcagatgctgttctgttgtaaca
cctgtcactgtggcacttttctgtggaccagctaggttaccaagtaatgctttgcaggaa
ccttcatcctttcgaggagatgggatatctaatgataacagtgatagtgagatggaggac
aaaacaactgctaatttggcactactgaagctagatgaatggctccatctcaaactggac
cctgaagctgcttgtttgctgttgcaactcagacagaagtggcatagcttatttctgcgt
cgtatgcgagctccttctaagccgtggtctcaagttgatgaaacaactgtaagagcaatt
gtagctgttttaagtgctgaagaacagtctgcaggtttgcagcagccttcaggaattggt
cagagaccaagacctatgacttgtgaagatcttccttcagcatctacatggaggtcagcc
aacagcagaaaaagctcagcagaaactgaattctctgatgactcctctaatgctgaaaaa
cttttaatgaaatctacacctcccacacttcaccagccaaagaagtacaaagaaaaaaac
attttgcactccaaacgaacttcagatgacaggtcagatcaatcatcagtgaagtctaca
gacagcagtagctatcctagtccctgtgctagtccttcttctccaatatctggaaagggt
tccaaatctccatcaccaagaccaaatatgccagttcggtactttataatgaaaagtagc
aacttgcaaaacattgatatttctcaacagaagggtatatggtctactacaccaagtaat
gaacgaaaactaaatagagccttttgggagagcagcatggtttacttagtattttcagtt
caagggtctggacactttcagggttttgctagaatggcttcggaaatagggtgtgagaaa
agtcaagactggggatctgctggtttcggaggtgtatttaaggtggagtggatccgaaaa
gaaagcattccttttcattttgcacaccatttgcttaacccctggaacgacaataagaaa
gtacaaataagcagagatggccaggagctggaaccgcaagttggagaccagttgctacag
ctttgggaccgtattcctttggcaggaaaaagctccagtgattga
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integrated database retrieval system
