Rathayibacter tanaceti: GSU10_01235
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Entry
GSU10_01235 CDS
T06377
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rte
Rathayibacter tanaceti
Pathway
rte03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rte00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GSU10_01235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rte03400
]
GSU10_01235
Enzymes [BR:
rte01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GSU10_01235
DNA repair and recombination proteins [BR:
rte03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GSU10_01235
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QHC54420
LinkDB
All DBs
Position
complement(273478..275991)
Genome browser
AA seq
837 aa
AA seq
DB search
MASSQQLVTVAGRRLRLTHLDKLVYPEAGYTKADVLGYYASVASAMLPHVARRPVTRKRW
VDGVGTAEQPGEVFFEKNLPSSAPHWLSRTRLTHASRDIEYPLVDDVAGLTWLAQQASLE
LHVPQWRVGSAGERRPPDRLVLDLDPGEGAGLAECAEVAFLARDLLEGMGLAPLPVTSGS
KGIHLYCALGASATSEQISTVAHELARALESDHRDLVVSDMKRTLREGKVLVDWSQNAAA
KTTIAPYSLRGRLLPAAAAPRSWEELGAAGLRQLAPDEVIERLRSDGDLLQPLLAARGAG
VEPTPERMAGFAATEASADRLAAYRSMRDAARTPEPVPEPGSGTTASGDTFVIQEHHARR
LHYDFRLEHDGVLVSWAVPKGPPLEGDPNRLAVQTEDHPLEYATFEGTIPAGEYGGGEVR
IWDEGSYALEKWREGEEVIAVLSGRADGGLGGEPRRYALLHTGSKAGAEKNWLLHLMAPG
AAHGEGTKRRGRAGGAAASAASRPAPSASTPGDGETPRRHRPMLATAGRRTDVDPDAAIE
MKWDGYRALVRVQGGAVTLTSRNGNDLTAVFPDVLGPLAAASADAVLDGEIVALDARGRP
DFGALQTRGGLSAPREIEAAARTTPVHVMLFDLLERAGEDVTARDYDSRRAALVELVAEN
ERVHLPSVFDGDLEEAMATSHSLGLEGVVAKRHDSPYREGSRSRDWIKLTHHRLQEVVIV
GWREGKGGLQGSVGALLTAIPCDDGLVYSGRVGTGFSDRERRSLVDRLAEHASDEPAVSV
PPAESRGVHWVSPVLVGEVRYRERTSAGTLRQPVWRGWRADKAASEVRVEGPGAEGS
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgtcacagcagctcgtcaccgtggcgggacggcgcctccgactgacccacctc
gacaagctcgtgtacccggaggcggggtacaccaaggccgacgtgctcggctattacgcc
tccgtcgcctccgcgatgctgccgcacgtggcacgtcggccggtcacccgcaaacgctgg
gtcgacggagtcggaacggccgagcagccgggcgaggtcttcttcgagaagaacctcccc
tcctccgccccgcactggctgagccgcacccggctcacacacgcctcgcgcgacatcgag
tacccgctcgtcgacgacgtcgccgggctgacctggctcgcgcagcaggcgtcgctcgaa
ctgcacgtgccgcagtggcgcgtcggatcggccggcgaacgccgcccaccggaccgcctc
gtgctcgatctcgaccccggcgagggcgccggtctcgcggagtgcgccgaagtggcgttc
ctggcgcgcgacctgctcgaggggatggggctggcgccgctgcccgtcaccagcggcagc
aagggcatccacctctactgcgcgctcggcgcctccgccaccagcgagcagatctcgacc
gtcgcccacgagctggcgcgggctctcgaatccgaccaccgcgacctcgtcgtctcggac
atgaagagaaccctgcgcgagggcaaagtcctggtcgactggagccagaacgcggccgcg
aagacgacgatcgcgccgtactcgctgcggggacgcctcctgcccgccgctgccgcaccc
cgcagctgggaggaactgggcgctgcgggcctgcgccagctcgcaccggacgaggtgatc
gagcggctcaggagcgacggcgacctgctccagccgctgctcgcggctcgcggcgccggg
gtggaaccgactccggagcggatggcgggcttcgccgcgaccgaggcctccgccgaccgg
ctcgccgcctaccgcagcatgcgcgacgccgcccgaaccccggagcccgtacccgagccc
gggtccggcaccaccgcctcgggcgacaccttcgtgatccaggagcaccacgcccgacgc
ctgcactacgacttccgcctcgagcacgacggcgtgctcgtcagctgggccgtgcccaag
ggcccgccgctggagggcgacccgaaccggctcgccgtgcagacagaggaccacccgctc
gagtacgcgaccttcgagggcaccatcccggccggcgagtacggcggcggcgaggtccgc
atctgggacgagggcagctacgcgctcgagaagtggcgggagggcgaggaggtgatcgcc
gtgctcagcgggcgcgcagacggcggtctcggcggcgagccccgccgctacgccctgctg
cacaccgggtcgaaggcgggagccgagaagaactggctgctgcacctcatggcgcccggg
gcggcgcacggggaggggacgaagcgacggggccgggcgggcggggccgccgcgtccgcc
gcctcccggcccgcaccctccgcctcgaccccgggcgacggcgagacgccgcgacgccac
cgccccatgctcgcgacggccggacgccgcaccgacgtcgatccggacgccgccatcgag
atgaagtgggacggctaccgggccctcgtacgcgtgcagggcggcgcggtgaccctgacc
agccgcaacggcaacgacctgaccgcggtgttcccggacgtgctcgggcccctggccgcg
gcctctgccgatgccgtgctcgacggcgagatcgtcgccctcgacgcacgcgggcgcccc
gacttcggcgccctgcagacccgcggcgggctgagcgcgccgcgcgagatcgaggcggcg
gcccggacgactcccgtgcacgtgatgctgttcgatctgctcgagcgcgccggcgaggac
gtcaccgcccgcgactacgattcccgccgtgccgccctcgtcgagctcgtcgccgagaac
gagcgcgtgcacctcccgtcggtgttcgacggcgatctggaggaggcgatggcgaccagc
cacagcctggggttggagggcgtggtcgccaagcgccacgactccccctaccgggagggc
agccgctcccgcgattggatcaagctcacccaccaccggctccaggaggtggtgatcgtg
ggctggagggagggcaagggcgggctgcagggctcggtcggcgcgctgctgaccgcgatc
ccctgcgatgacgggctggtgtactccggccgggtcggcaccggtttcagcgaccgcgag
cgccgcagcctcgtcgaccgcctggctgagcacgcgagcgacgagccggccgtctcggtg
cctccggccgagtcgcgcggggtgcactgggtgtcgccggtgctggtcggcgaggtccgc
taccgcgagcgcacctctgccggcacgctgcggcagccggtgtggcgcggttggcgagcg
gacaaggctgcgagcgaggtgcgggtggaggggccgggcgcggaggggagctga
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