KEGG   Rana temporaria (common frog): 120918921
Entry
120918921         CDS       T07929                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
rtem  Rana temporaria (common frog)
Pathway
rtem03013  Nucleocytoplasmic transport
rtem03015  mRNA surveillance pathway
rtem03040  Spliceosome
rtem05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:rtem00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120918921 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    120918921 (ALYREF)
   03015 mRNA surveillance pathway
    120918921 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    120918921 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rtem03019]
    120918921 (ALYREF)
   03041 Spliceosome [BR:rtem03041]
    120918921 (ALYREF)
Messenger RNA biogenesis [BR:rtem03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     120918921 (ALYREF)
    TREX complex
     120918921 (ALYREF)
Spliceosome [BR:rtem03041]
 Complex C
  Other components
   EJC/TREX
    120918921 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    120918921 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 120918921
NCBI-ProteinID: XP_040186743
LinkDB
Position
12:134787370..134796767
AA seq 279 aa
MGDKMDMSLDDIIKMNRTQRPAGRGGRGGRGARGGAGVGRVLGGGRGGGGGGGGGAGGGG
AGGGGGGQQGPLRTRPMLSRGARNRPTPYNRPKQLPDKWQHDLFDSGFGGGGGGGGGGAG
METGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALK
AMKQYNGVPLDGRSMNIQLVTSQIESQRRPIQTSARGALTRPRGAISFSAGGGNNRRGGG
GGRGNRGRGRGSGRNTKQQLSAEELDAQLDAYNARMDTS
NT seq 840 nt   +upstreamnt  +downstreamnt
atgggggacaaaatggacatgtccctggatgatatcatcaagatgaaccggacccagagg
ccggcgggccgagggggccggggaggaagaggcgcccgagggggagccggagtaggccgc
gtgctcggaggcggacgaggtggtggtggaggcggcggcggaggagcgggtggcggagga
gcgggtggcggaggaggaggacaacaaggcccgctaaggacgaggcctatgctgagccga
ggagcgaggaaccggccgacaccatacaataggcccaagcagcttccagacaagtggcag
catgacctgtttgacagtggtttcggtggtggtggtggtggtggtggcggcggcgctgga
atggagaccggaggaaaactacttgtgtccaatctggactttggggtttcagatgcagat
atccaggaactgtttgcagaattcggtacactaaagaaagcagctgtacactacgacagg
tccggcaggagcttgggaacagctgatgtgcactttgaaagaaaagccgatgcactaaag
gcaatgaagcagtataatggggtaccacttgacgggcgttccatgaacatccagttggtc
acatcacagatcgaatcacagaggagacctatacaaacgtctgccaggggtgcattgacg
aggccacgaggtgctattagctttagtgctggtggtggaaacaacaggagaggaggaggt
ggtggcagaggaaaccggggtcgtggacggggttcaggaagaaacacaaagcagcagtta
tcggcagaggagctggatgcacagcttgatgcctacaatgcccgtatggatacaagttaa

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