Rana temporaria (common frog): 120918921
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Entry
120918921 CDS
T07929
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
rtem
Rana temporaria (common frog)
Pathway
rtem03013
Nucleocytoplasmic transport
rtem03015
mRNA surveillance pathway
rtem03040
Spliceosome
rtem05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
rtem00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120918921 (ALYREF)
09122 Translation
03013 Nucleocytoplasmic transport
120918921 (ALYREF)
03015 mRNA surveillance pathway
120918921 (ALYREF)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120918921 (ALYREF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtem03019
]
120918921 (ALYREF)
03041 Spliceosome [BR:
rtem03041
]
120918921 (ALYREF)
Messenger RNA biogenesis [BR:
rtem03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120918921 (ALYREF)
TREX complex
120918921 (ALYREF)
Spliceosome [BR:
rtem03041
]
Complex C
Other components
EJC/TREX
120918921 (ALYREF)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120918921 (ALYREF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120918921
NCBI-ProteinID:
XP_040186743
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All DBs
Position
12:134787370..134796767
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AA seq
279 aa
AA seq
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MGDKMDMSLDDIIKMNRTQRPAGRGGRGGRGARGGAGVGRVLGGGRGGGGGGGGGAGGGG
AGGGGGGQQGPLRTRPMLSRGARNRPTPYNRPKQLPDKWQHDLFDSGFGGGGGGGGGGAG
METGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALK
AMKQYNGVPLDGRSMNIQLVTSQIESQRRPIQTSARGALTRPRGAISFSAGGGNNRRGGG
GGRGNRGRGRGSGRNTKQQLSAEELDAQLDAYNARMDTS
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaaaatggacatgtccctggatgatatcatcaagatgaaccggacccagagg
ccggcgggccgagggggccggggaggaagaggcgcccgagggggagccggagtaggccgc
gtgctcggaggcggacgaggtggtggtggaggcggcggcggaggagcgggtggcggagga
gcgggtggcggaggaggaggacaacaaggcccgctaaggacgaggcctatgctgagccga
ggagcgaggaaccggccgacaccatacaataggcccaagcagcttccagacaagtggcag
catgacctgtttgacagtggtttcggtggtggtggtggtggtggtggcggcggcgctgga
atggagaccggaggaaaactacttgtgtccaatctggactttggggtttcagatgcagat
atccaggaactgtttgcagaattcggtacactaaagaaagcagctgtacactacgacagg
tccggcaggagcttgggaacagctgatgtgcactttgaaagaaaagccgatgcactaaag
gcaatgaagcagtataatggggtaccacttgacgggcgttccatgaacatccagttggtc
acatcacagatcgaatcacagaggagacctatacaaacgtctgccaggggtgcattgacg
aggccacgaggtgctattagctttagtgctggtggtggaaacaacaggagaggaggaggt
ggtggcagaggaaaccggggtcgtggacggggttcaggaagaaacacaaagcagcagtta
tcggcagaggagctggatgcacagcttgatgcctacaatgcccgtatggatacaagttaa
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