Rana temporaria (common frog): 120931668
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Entry
120931668 CDS
T07929
Name
(RefSeq) collagen alpha-1(VII) chain-like isoform X1
Organism
rtem
Rana temporaria (common frog)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
fn3
VWA_2
Kunitz_BPTI
Pur_ac_phosph_N
DUF4992
Interfer-bind
Motif
Other DBs
NCBI-GeneID:
120931668
NCBI-ProteinID:
XP_040199252
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All DBs
Position
3:118937407..119433080
Genome browser
AA seq
2826 aa
AA seq
DB search
MKILLHFRIFTLTALLTKWTALGQLEDCRSAEAADIVFLIDESWTVGQENFQIIKDFIRS
MITSFQNTEVLGREGIRFGVAVYGDSTRVSIELSDYETMQDVLLALQNIVYNGGNTKTGE
ALDYLANKVFNPSISREDVPKIVVLLTDGKSGDAVEEKAQGLQDRGVTIFAIGIKNADRN
ELIKIASGPIEEHVIIVRDYWSLFDILPRISRRVCFTASEPPRPIKQIIENEKIVGPRDL
IVSEQSYSSIRVTWSPATGDVTGYQVVLNSLTPSGRLNTNDEKQIMLDKDKHTVLVMDLK
PTTEYLFTVLAIYPNVIGDSATVKGKTTAVPPVTNFRVIEEGLFGLKVAWTPPLGKLEGY
KIYIPRSNRPGFTYEHILKGDVFSHTIDNLEEDKEYTVSIYAVYPQGPSEPVSSMGRTLK
LVPVKSLTLQNITTGTIQAYWTTVRGATGYRLTWSSAEGYDQNINLADSYTQYMIQGLRI
DMEYTVTINPIFVDVEGPVLAAKATTLASSSVESLKVSTVSINTAVVTWNAVPGATGYRI
AYGPTPEFFGRDRPRQLALNSTLTSFELKNLAHNTEYVISLYVLFGSAVGPGISTTARTS
PLGYVSNFKVTGYTSSSISLAWSTTTGATEYKVSWNPASSDSPKSQYLEPSIRSYHLTNL
HPNTRYIVNVQAVYSNTEGPPATLIQNTDSSSVKLLPVKDLQVIDTGVNTLKLSWKKTPG
ITHYKISWVPFDGGARNSRIVSADASFFTIPDLKESATYNIYVSSIIGNREGSPVLLTAK
TLILPKVDFFEVKETTGDTALLSWTGVTGATSYLLSWRLSSQADSSMEQLTGSYRSYRLG
GLQYGKTYVFAIKPLFGEMEGPERVITKTMSEPVRKPVPSTVHGHRLTTTNERTTTVRPI
VNPRPSPPPETAKFTSSAARGTTAFISEPICAKLKADIVFLVDESSSIGPSNFIKVKDFL
YRIVSYFPKIGPQGAQIAIVQYSEEPRTEFHLNENKDRNSILKAIRSMQYFGGNTKTGRG
IGHVLKELFQVSKGMRPSSPHLILLITDGRSQDNVMQPSRVAHALGIRMIAVGVGAADMD
ELRSIMMHRNLDDLFFVSTFDDFPLIVQELIETICSENKATVKTQAEEDVNPEPERSETL
PEEPVGPCSSSCPKGLKGEKGETGPPGQSTFTGLQTGGFDLLNINSKGEKGERGLPGQDG
VPGLPGRPGRTGPPGPPGLMGHKGFQGDRGLQGYPGSSGPKGDRGEPGYVLGAVDGLAGL
GGIPGSPGAKGYPGTPGLPGPPGIPGFPGPLGPPGLSIKGEPGETGTQGPRGKIGSKGDK
GDEGESGRPGLPGPIGLDGSPGFQGAKGEKGEAGIGYPGVPGLKGMQGDKGAMGPIGPPG
PKGVQGLQGIEGQAGLRGKKGQDGEKGEKGERGDIGPIGPAGRAGFPGPTGLKGDQGIQG
FPGAPAMGVVGPTGKKGARGDIGPVGPQGSKGIKGDEGNKGNKGEPGYGIPGQAGPKGDP
GERGNIGLSGKPGPKGEDGDRGQKGEPGTSLTLPGIRGKDGEQGIKGDPGEMGEPGMKGE
VGEKGQRGTTGLPGRIGDSGQKGDMGLSGRDGIDGKKGNKGDSGQPGPPGSSITSIDKNL
LAKGEKGDPGVAGDSGEGGPKGDKGDPGPPGLIGPEGRPGPPGSAALESTPEKGMKGEKG
STGSPGKNGMDGKDGISGTPGQKGEIAQKGEKGDSGTSVETVIKGERGDVGPMGPPGPPG
PQVTPGKSFEMKDLEILFESYGIKLSLLKELTDYLIHHGTADLFQHLSNSKKDRNIKKKQ
VLKPTTNNSPKKHEISNETDEEDLNSHSALESISSLEGTQTQSSSQDVNKNKKEQKKRKK
LLVEAVPVDVFTNVVTEEQEENTEDHQLQLTNQESETFALPTQIPSTEDVNKFLTVTHSI
THAQPERSTRKQEKESKKDYKKKARLEKTTTDVKMGSSTTSETVGSEVDVTDNTDRVIRI
AMLTTTEPSTVDISEEAETGLDLSINTHAALEAQQAFFGKESKKEHKKKARLEKTTTDVK
MGSSAISETVGSEADVTDNIDRFIRIATLTTTEPSTVDISEEAETGLDLSVNTRAAPEAQ
QVFFGKEMITEEHSDSPETKQSHVNSTYNVKNIRVRRMVDEDYERVSYPGTQGGKRKKKL
YSMEEEQTLESSKRDKEGKRRSGPQRDKAQKGEPGEPGDPGIHGQKGEKGEIGENGQKGE
PGVGHRGPVGQAGPPGFKGEPGERGPQGVQGIQGIQGNPGISGSMGERGEPGMRGPPGPP
GERGKRGKNGIPGTQGTPGLAGKEGMQGPPGIKGEKGEGVVGEPGPRGPRGFPGLRGEHG
IPGLKGPAGIMSPKGFPGVKGERGDRGVTGYKGEKGDPMTIFGTPGYKGSKGELGDRGHP
GFDGDKGEKGEDGPPGEKGVKGEAGSKGSMGLFGARGPVGQKGEPGEPGLLGDAGTAGLD
GLNGHKGSKGDRGLQGQKGDPGEKGDPGLPGDMGQKGEKGMQGYPGKTGEPGLKGAKGEI
GGQGVPGLPGSLGPSGLKGENGEKGIDGLSGDQGDKGDKGNKGSFGLSGFRGPIGQPGQL
GAPGAQGPEGPRGDPGQKGKIGKRGKSLPCPRAEPGSPGTKGEMGQDGLEGFKGEKGDPG
LSEEDVKDLVKNELIDKCACTAVLQTTPASQHRISDHIQPGKEFQLIVKSIDPDEEYEDS
DPIEEEVTVAPVYSAAGNTEENIYRNETAATTEYTSTTSELKYKDGSDKELMGQLRRRKR
HVGDPCQLPMNEGFCSDYILLWYYHLKADDCRPFVYGGCGGNRNRFKTRQKCEQMCKNKT
DPSPER
NT seq
8481 nt
NT seq
+upstream
nt +downstream
nt
atgaagatattattacacttcaggattttcacactcacagctcttttgacaaaatggaca
gcactgggccagttagaagactgcagatctgccgaggcagcagacattgtattcctgata
gatgaatcgtggactgttggacaggaaaacttccagattattaaagactttataaggagt
atgattacttcatttcagaatacagaggtacttgggagagaaggaatacgttttggagtt
gctgtttatggagattcaacaagggtgagcattgaactgtcagattatgaaaccatgcaa
gacgtgttactggctctccaaaacattgtatataatggaggtaacactaagactggagaa
gcacttgattatttagcaaacaaggtgtttaatccatccatttccagagaagatgtaccc
aagattgttgtgctgttaactgatggaaaatcaggtgatgcagtagaagagaaagcccaa
ggattgcaagacaggggagtcacaatatttgctataggaataaaaaatgcagacagaaat
gaactgataaaaattgcatcaggacctattgaagaacatgtcatcatagtaagagactac
tggtccctatttgatatactgcccaggatctcaagaagagtttgctttactgcatctgaa
cctccaagacctatcaagcagataattgaaaatgaaaaaattgttggtccgagagatctg
attgtgagtgaacaaagttacagttctataagagttacatggagccctgccacaggggat
gttactgggtaccaagttgtcttgaattctctcacaccatcagggcgcctcaatacaaac
gacgagaaacaaataatgttggacaaagacaaacacacggtgctggtgatggatcttaag
ccaaccactgaatatttattcactgtacttgccatataccccaatgtcattggagattca
gccacagttaagggaaaaacaactgctgtgcctcctgtaaccaatttccgagtcatagaa
gagggtctttttggtttaaaagtagcctggactccccctttgggaaaactggaaggctac
aaaatctatatcccacgatccaacaggcctggatttacatatgagcacattttaaaagga
gatgttttctcacacacgattgataatttggaagaagacaaagaatacactgtcagtatc
tatgcagtatatccacaaggtccaagtgagcctgtatcttcaatgggacgtacattaaag
ctggttcctgtaaaaagcttgacattgcagaacatcacaactggaacgattcaggcttac
tggactacggtgcgaggagctactggatatcgtcttacttggtcatctgcagagggatat
gaccaaaatattaacctggcagatagctatactcagtatatgattcaagggctgcgtata
gacatggaatatactgtaactatcaatcccatctttgtagacgttgaaggccctgttctt
gctgctaaagcaacaaccttggcctcaagttcagttgaaagtcttaaagtgagcacggta
tccatcaatacagcagttgtcacatggaatgcagtccctggtgctactggatataggata
gcatatggccccacaccagagttttttggcagagatcgtccacgccagcttgcactgaac
agtacacttacatcttttgagctgaagaacctggcacacaacacagagtatgtaatctca
ttatatgtgctctttggttctgctgtgggaccaggcatctccaccactgccagaacatca
cctctcggatatgtatctaacttcaaagtgactgggtacactagttcttccatatcactg
gcgtggagcacaaccactggagccactgaatataaagtatcctggaaccctgcatcatca
gactcccctaaaagccagtatctggaaccctcaataaggtcatatcacttaacaaaccta
catccaaacaccaggtatatagtgaatgtgcaggcagtgtacagcaacaccgaagggcct
cctgccaccctcattcaaaacacagactccagttctgttaagctgcttccagttaaggac
ctgcaggtaattgacactggagttaacactctcaagctgtcctggaagaaaacacccgga
ataactcattataaaatatcatgggttccgttcgatggtggcgctagaaactcaaggatt
gtctccgcagatgcttcatttttcactatacctgatctaaaggaaagtgccacttataat
atctacgtgtcatcaattattggaaacagagagggaagtcctgttcttctcacagcaaaa
acattgattctacccaaagtagacttttttgaagttaaagaaaccactggggacactgca
ttactgagctggactggagtcactggggcaacatcttatcttttatcatggagactttct
tcccaagcagattcgtctatggagcagttgactggatcttacaggtcttatagactaggc
ggattgcagtatggaaaaacatatgtttttgcaataaaaccactctttggagagatggaa
ggtcctgaaagagtaataaccaaaaccatgtctgaaccagtgagaaagcctgttccttct
actgttcatggacatagactgacaacaacaaatgaaaggacaacaacagtgagacctatt
gtgaatccacggccaagccccccaccagagactgccaaatttaccagttctgctgctaga
ggaacgacagcttttatttctgagccaatttgtgcaaagctgaaagctgacatagtattt
cttgtggatgagtcttccagtattggaccaagcaattttatcaaagtcaaggactttttg
tatagaatagtttcatattttccaaagatcggaccccaaggagcacagattgctattgtt
caatacagtgaagaaccgagaacagaatttcatttgaatgaaaacaaggacagaaattct
attttgaaggccatacgaagcatgcagtattttggaggcaataccaagacaggacgaggt
attgggcatgttctgaaggagctcttccaggtgtctaaaggaatgaggccatcttctcct
catttgattttgttgataacagatggaagatcgcaggataatgttatgcagccatccaga
gtggctcatgccttagggatccgtatgattgctgtgggtgtgggtgctgcggacatggat
gagctgagaagtatcatgatgcaccgtaatctggatgatttattctttgtcagcacattt
gatgacttccctctaatcgtacaagagctgatagaaacaatttgttctgagaacaaagca
acagtgaaaacacaagctgaagaggatgttaacccagagccagaaagatcagagacactt
ccagaggaaccagtgggaccttgctcatcttcgtgtcctaaaggtctaaagggagaaaag
ggtgaaacaggacccccaggacaatctacattcacaggtttacagactggcggctttgat
ctccttaacataaattccaaaggagagaaaggagaacggggtttgcctgggcaagatggt
gttcctggccttccagggcgccctggtcgaacgggtcccccaggtcctcccggcctaatg
ggtcataagggctttcaaggtgacaggggtcttcaagggtatccaggatcatctggacca
aaaggagacagaggagagccaggctatgtgcttggggcagttgatggactggctggtctt
ggtggtattcctggatcacccggtgcaaagggttatcctgggactcctggccttcctggt
cctcctggcattccaggatttccaggtcccctaggtcctccaggactctctatcaagggt
gaaccaggtgaaacaggcactcaaggcccccgtggaaagattggatcaaagggagataaa
ggagatgagggagagtctggcagacctggcttacctggtccaataggccttgatggctct
cctggatttcaaggagcaaaaggagaaaagggagaagcagggattggttacccaggagta
ccaggtttgaaaggaatgcaaggagataagggagccatgggacctattggaccacctgga
ccaaagggtgtacaaggcttgcaagggattgaaggacaagctggtttaaggggcaaaaag
ggacaagatggtgaaaaaggtgaaaagggagagcgtggcgatataggtcctattggacct
gcaggaagagctgggtttccaggtccaactgggcttaaaggtgaccagggcattcaaggt
tttccaggagctccagcaatgggggtagttggacctactggcaagaagggtgctagaggt
gacattggacccgttggaccccaaggttctaaaggaatcaaaggagatgaaggaaataaa
ggaaacaagggagaaccaggctatgggatccctggccaggcagggccaaagggagatcct
ggtgaaagaggaaacattggattatctggaaaaccaggcccaaaaggagaagatggtgac
aggggacaaaagggtgagcctggaacaagtttgaccttgcctggaataagaggtaaagat
ggtgagcaaggcataaaaggagatccaggagagatgggtgaacctggaatgaagggagag
gttggagaaaaaggacaacggggtacaacaggactgcctggccgtattggtgattcagga
caaaaaggagacatgggactttcaggcagagatggcatcgatggtaaaaaaggaaataaa
ggagattctggccaaccaggacccccaggaagttcaattacatcaatcgacaagaacctg
cttgccaaaggagaaaagggagatcctggagtagcaggcgattcaggggaggggggtcct
aaaggtgacaagggagaccctggaccaccaggactgataggtccagagggtcgcccagga
cctccaggcagtgctgcgttggaatccactccagaaaaaggaatgaagggggaaaaagga
agcacagggtcacctggaaaaaatggcatggatggcaaggatggaatttctggaacacct
gggcaaaagggagagattgcacagaaaggtgaaaaaggagatagtggaacatctgttgaa
acagtgataaagggtgagcggggagatgtagggccaatgggacccccaggccctccagga
cctcaggtaacccctggaaaaagctttgaaatgaaggatctggaaattttgtttgaatca
tatggtataaagctgagccttctgaaggaattaacagactatctcatacatcatggaaca
gcagatttgtttcagcatctctcaaacagcaaaaaggatcgaaacataaagaaaaagcag
gttttaaaacccacaactaataatagccccaaaaaacatgaaatttcaaatgaaactgat
gaggaggatttaaattctcattcagccttggaaagtatttccagtctagaggggactcag
acacagtcttcctctcaggatgtaaataaaaacaaaaaagagcagaagaagagaaagaaa
cttctagtggaggctgtgcctgttgatgtttttacaaatgtggtcactgaggagcaagag
gaaaacacagaggaccatcaacttcagctaactaatcaggagagtgagacatttgcactg
cctactcagatacccagcactgaagatgtcaataaattcttaacagtaacccattccatt
acacatgcacagcctgaaaggtccacaagaaaacaggaaaaggagtctaagaaggattac
aagaaaaaagcccgtctagaaaaaacaacaactgatgtaaagatgggcagctctacaacc
agtgagactgtaggaagtgaagttgatgttactgataacactgatagagttatcagaata
gccatgctaactacaactgagccatctactgtggatatttcagaagaggcagaaacagga
cttgacctttcgattaacacacatgcagcactggaagcacagcaagcattttttggaaag
gagtctaaaaaggagcacaaaaaaaaagcccgtctagaaaaaacaacaactgatgtaaag
atgggcagctctgcaatcagtgagactgtaggaagtgaagctgatgttactgataacatt
gatagatttatcagaatagccacactaactacaactgagccatctactgtggatatttca
gaagaggcagaaacaggacttgacctttctgttaacacacgtgcagcaccggaagcacag
caagtattttttggaaaggagatgatcaccgaggaacattcagattctccagaaactaag
cagagccacgttaattcaacatacaatgtgaaaaacattcgcgtaagaagaatggtggat
gaggattacgagcgtgtgtcttacccagggacgcagggaggaaagagaaaaaagaaacta
tattcaatggaagaagagcaaactttggaatcctccaaacgagataaggaaggaaaaagg
cgctcaggaccccagagagacaaagcacaaaagggtgaaccaggggaacctggagatcct
ggaattcatggacagaagggggaaaaaggagaaattggtgaaaacggacaaaagggtgaa
cctggtgttggccacagaggaccagtaggacaagctggacctcctggttttaagggtgaa
ccaggagaacgagggcctcagggagtacaaggtatccaagggattcaaggaaatcctggt
atttctggatctatgggtgaaagaggagaaccaggaatgcgtgggccccctggacctcct
ggagaaagaggaaaaagggggaaaaatggcatccctggaactcagggaactcctggactt
gctggtaaagagggaatgcaagggccgccaggtataaagggtgagaagggtgaaggagtt
gtgggtgagcctggtcccagaggtcctcgtggtttcccaggtctcagaggggaacatgga
attccaggattaaaaggcccagcaggtataatgagccctaaaggatttccaggtgtgaaa
ggtgaaagaggtgatcgaggagtgactggttacaagggagaaaagggtgacccgatgaca
atatttggaactccaggctacaaaggaagtaaaggagagctgggtgacagaggccaccct
ggctttgatggagataaaggagaaaagggagaagatggaccacctggagaaaaaggcgtg
aaaggtgaagcaggctccaaaggatctatgggactatttggagcacgtggccctgtagga
caaaagggtgaacctggggaacctggacttcttggagatgcaggtacagcaggtcttgat
gggctcaatggacataaaggatctaagggtgacagagggttacaaggacaaaagggagat
ccgggagaaaagggagaccctggattaccaggagacatgggtcagaaaggagaaaaggga
atgcaaggataccctggcaaaacaggtgaacctggcttaaaaggtgcaaagggtgaaatt
ggaggacaaggagttcctggtctacctggttctctaggcccatcagggctaaagggggaa
aatggagagaaaggaattgatggtctcagtggagatcaaggagataaaggtgataagggt
aataaaggatcatttggactaagtggtttcagagggccaattggacaaccaggacaattg
ggtgcccctggagctcagggacctgaaggaccaagaggagatccagggcaaaagggtaaa
ataggaaagagaggaaagtctttgccttgtcccagggcagagccaggatcacctggaaca
aaaggagaaatgggacaagatgggcttgagggcttcaaaggtgaaaagggtgatcctgga
ctctcagaggaagatgtgaaagacctggtcaaaaacgagttgattgacaagtgtgcgtgc
acagctgttttgcaaacaacaccagcatcccaacacagaataagtgatcacatccagcct
ggaaaagaattccagctgattgtgaagtccatagaccctgatgaagaatatgaagactct
gatccaatagaagaagaggtgaccgtggcgcctgtatatagtgcagctggaaatacagag
gaaaatatttaccgtaatgagacagcagctaccacagaatatacaagtaccacctcagag
ctgaaatacaaagacggaagtgataaggagctaatgggacagttgcgcaggaggaagcgg
catgttggtgacccctgtcagctacccatgaatgaaggcttttgctcagattatatatta
ctttggtattaccatttaaaagctgatgattgccgaccatttgtttacggaggatgtgga
ggtaaccgtaatcgattcaaaaccaggcagaagtgtgaacagatgtgtaaaaataaaaca
gatccttccccagaaaggtga
DBGET
integrated database retrieval system
