Raoultella terrigena: NCTC13098_01297
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Entry
NCTC13098_01297 CDS
T06046
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rtg
Raoultella terrigena
Pathway
rtg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC13098_01297 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtg03400
]
NCTC13098_01297 (recB)
Enzymes [BR:
rtg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC13098_01297 (recB)
DNA repair and recombination proteins [BR:
rtg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC13098_01297 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
VDR24996
UniProt:
A0A3P8M0H6
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All DBs
Position
1:1080264..1083809
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AA seq
1181 aa
AA seq
DB search
MTETAEPLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGESAFPRPVSVEELL
VVTFTEAATEELRGRIRSNIHGLRIACLRETASDPLYAALLAEIPDKNQAAQTLMLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESRLRYQACADFWRRHCYPLPREIA
AVIHEAWKGPRDLLKSLDRWLQGEAPQLKSPPGQEETLAERHRQIIERIDAVKRQWREQV
GEIESVLENSGLDRRKFNRGNQGKWIEKVSLWAQEETLSYRLPEALEKFSQPFLYERTKA
DGEPPVHPLFSAIEALLSAPLTLTDLVIARAMVEIREAVAREKRRRGELGFDDMLSRLDD
ALRSESGEALASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWRRQPETALLLIGDPKQAIY
AFRGADIFTYMKARGDVAAHYTLDTNWRSAPGMVESVNRLFSLSDNPFMFREIPFLPVKS
APKNQHLRFTVDDDAVPAMNIWLMPGEAVGAGDYQTFMAQLCASQIRDWLSAGQQGRALL
WRDDRARPVQASDITVLVRNRQEASLIRDALQVLAIPSVYLSNRDSVFETPEAQELLWVL
QAALAPERENTLRSALATSIFGLNALDIENLNQDERAWDALVEEFSDYRRIWRQRGVMPM
LRALMTARHIAENLLVTSGGERRLTDILHISELLQEAANQLESEHALVRWLTQRIAEPDS
NASSQQMRLESDKHLVQIVTVHKSKGLEYPLVWLPFIARFRKQDQAFYHDRDSFAAVLDL
EQNEGSLELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSTRRSDKPGDSDFHHSALGR
LLQGGEAMDAAGLTARLQAFCCADIALQTPGVADRQPWQAPQEVLPPLSARMLGRSIVDD
WRVTSYSGLQQHGHSPAQDLLPRLDVDAAGVGEVAEEPQLTPHQFPRGASPGTFLHGLFE
DLDFTQPVPADWMAEKLRSGGFGERWTPVLTQWLDDVLRTPLPGADIALNQLAAADKQAE
MAFYLPIEAPLDPQRLDALVRRYDPLSAQCPGLDFRQVRGMLKGFIDLVFRHNGRYYLLD
YKSNWLGDDREAYTEQAMAQAMCTHRYDLQYQLYSLALHRYLRHRVADYDYERHFGGVIY
LFLRGMDGQDGGQGIFTTRPELPLIDGLDALFAGEVQEIAS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaccgccgagcctcttgaccccctgcgcttgcccctgacgggcgagcgcctg
atagaagcctctgcgggcaccggaaaaacctttaccatcgcggcgctgtacctccggctg
ctgctggggctgggcggagaatccgcctttccccggccggtaagcgtggaggagctgctg
gtggtgaccttcaccgaggcggcgaccgaggagctgcgcggccgcatccgcagcaacatc
cacgggctgcgcatcgcctgcctgcgcgaaacggcctccgaccctctctacgccgcgctg
ctggcggaaattccggacaaaaaccaggccgcacaaacgctgatgctggcggagcggcag
atggacgaagcggcggtgttcaccatccacggcttctgccagcgcatgctcagcctcaac
gcgtttgagtccggcatgctctttgaacagcagctgattgaggacgaatcccggctccgc
tatcaggcctgcgccgatttctggcgccgccactgctacccgctcccgcgcgaaatagcc
gcggttatccacgaagcctggaaaggcccgcgcgatctgctgaaatccctcgaccgctgg
ctgcagggcgaagccccgcagcttaaatccccgcccgggcaggaggagacgcttgccgaa
cgccatcggcaaatcatcgagcgcattgacgcggtgaagcggcagtggcgcgagcaggtg
ggcgagattgaaagcgtgctggaaaactccggcctcgaccggcgcaaattcaaccgcggt
aaccagggtaagtggatagagaaagtcagcctttgggcgcaggaagagactctgagctac
cggctgccggaggcgctggagaaattctcccagccgttcctttacgaacgcaccaaagcg
gatggcgaaccgccggttcacccgctgtttagcgcgattgaggcgctgctctctgcgccg
ctgaccctgacggatctggtgatcgcccgggcaatggtggagatccgcgaagcggtagcg
cgcgaaaagcgtcgccgcggagagctcggttttgatgacatgctcagccgcctcgacgat
gcgctgcgtagcgaaagcggcgaagcgctggccagcgctatccggcagcgctttccggta
gcgatgatcgatgagttccaggataccgacccgcagcagtaccgcatttttcgccgcatc
tggcggcggcagccggagacggcgctgctgcttatcggcgatcccaaacaggctatttac
gcctttcgcggcgcggatatctttacctatatgaaggcgcgcggcgacgttgccgcgcac
tacacgctggataccaactggcgctccgctccgggaatggtggagagcgtcaatcgcctg
ttcagcctcagcgataatccgtttatgttccgcgaaatcccgttcctgccggtaaagtcg
gcgccgaaaaaccagcatctgcgcttcaccgttgacgacgatgcggttccggctatgaac
atctggctgatgccgggggaagctgtgggcgcgggggattatcaaacctttatggcccag
ctctgcgcttcgcaaatccgcgactggcttagcgccggccagcaggggcgggcgctgctg
tggcgcgacgatcgcgctcggccggtgcaggcttccgatatcacggtgctggtgcgtaac
cgccaggaggcgtcgctgatccgcgatgcgctgcaggtgttggccattccgtcggtctat
ctctccaaccgcgatagcgtatttgaaacgccggaagcgcaggagctgctgtgggtactc
caggcggcgctggcgcccgaacgcgaaaacacgctgcgcagcgcgctggcgacctcgatt
ttcggcctcaacgccctcgatattgaaaacctcaaccaggatgagcgagcgtgggatgca
ctggtggaagagtttagcgactaccgccgcatctggcgccagcgcggggtcatgccgatg
ctaagagcgctgatgaccgccagacatattgccgaaaacctgctggtgacgagcggcggc
gagcggcgcttaaccgatatcctgcatatcagcgagctgctgcaggaagcggccaaccag
ctggagagcgagcatgcgctggtgcgttggctgacgcagcgcatcgccgagccggacagc
aacgcctccagccagcagatgcgcctggaaagcgacaagcatctggtgcagatagtcacc
gtacataaatcgaaagggctggaatacccgctggtgtggctgccgtttatcgcccgcttc
cgcaagcaggatcaggcgttttatcacgatcgcgactcctttgcggcggtgctcgacctt
gagcagaatgaggggagcctcgagctggcggaggcggagcgtctggcggaagatttacgc
ctgctgtacgtggccctgacgcgagcggtctggcactgcagcctcggcgtggcgccgctc
agcacccgacgcagcgacaagccgggcgacagcgattttcaccacagcgccctggggcgc
cttctgcagggaggcgaagcgatggatgccgcggggctgacggcccgcctgcaggcgttc
tgctgcgcggatattgcgctgcaaacccccggcgttgccgatcggcagccctggcaggcg
ccgcaggaggtgctgccgccgctgtcggcgcggatgctggggcgttcgatcgtcgatgac
tggcgggtcaccagctactccgggctacagcagcatggccacagcccggcgcaggattta
ctgccgcgtcttgacgttgacgccgccggcgtgggggaggtggcggaagagccgcagctc
accccgcatcagttcccgcgcggggcgtcgccggggacatttttgcacggcctgtttgaa
gacctcgactttacccagccggtccccgccgactggatggcggaaaagctgcggtccggc
ggatttggcgaacgctggacgccggtgctgacccaatggctggatgacgtgctgcgcacg
ccgctgccgggcgccgatatcgcgctgaatcagctcgcggcggcggacaagcaggctgag
atggcgttctatttacccatcgaggccccgctggacccgcagcgcctggatgcgctggtt
cgccgctacgacccgctttcggcgcagtgcccggggcttgatttccgccaggtacgcgga
atgctgaaagggtttatcgacctcgtgtttcggcataacggccgctactacctgctggat
tacaaatccaactggctgggggacgatcgcgaagcctacacggagcaggcaatggcgcag
gcgatgtgcacgcaccgctatgatttacagtatcagctctatagcctggcgctgcaccgc
tatttacgccatcgcgttgctgactatgactatgagcgccattttggtggcgtcatttat
ctctttttacgcggaatggacgggcaggacggagggcaggggatatttaccacgcgccct
gagctgccgctgatcgacggcctggacgccctgtttgccggcgaagttcaggagatcgct
tcatga
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