Rhodanobacter thiooxydans: LRK53_16240
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Entry
LRK53_16240 CDS
T08065
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
rth
Rhodanobacter thiooxydans
Pathway
rth00470
D-Amino acid metabolism
rth00550
Peptidoglycan biosynthesis
rth01100
Metabolic pathways
rth01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rth00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
LRK53_16240
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LRK53_16240
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
LRK53_16240
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rth01011
]
LRK53_16240
Enzymes [BR:
rth01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
LRK53_16240
Peptidoglycan biosynthesis and degradation proteins [BR:
rth01011
]
Precursor biosynthesis
Amino acid ligase
LRK53_16240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
CPSase_L_D2
ATP-grasp_4
ATP-grasp_3
ATP-grasp
ATPgrasp_YheCD
TTL
Motif
Other DBs
NCBI-ProteinID:
UJJ54485
LinkDB
All DBs
Position
complement(3575343..3576413)
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AA seq
356 aa
AA seq
DB search
MKVTVNNISDPARFGRVAVVMGGSSAEREVSLDSGRNVLEALRARGVDAQPVDGIPALLD
ALRAGGFARVFNILHGQHGGGEDGVLQGALEALNVPYTGSGVLGSALSMDKPRSKRVWQS
LGLPTPKFVALPRGADPGSSPGQAVHAAAKQVGFPLIVKPACEGSSVGVTRVFEESQLDQ
AVELAAKYPGDLLMETLIEGDELTVAILGRQVLPSIHIVPKGAFYDYNAKYIAEDTLYLC
PGLEGDAETELRALALAAFDALGCTGWGRVDVMRDRQGRNWLLEVNTAPGMTSHSLVPKA
AKAAGIDYQELCWRVLETSFRDGSFDADGSTESRIPNPGSQQPKGWSSRASNGGAQ
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgaccgtgaacaacatcagcgatcctgcccggttcggccgcgtcgccgtggtg
atgggcggcagctcggccgagcgcgaagtctcgctggattccggccgcaacgtgctggaa
gcgctcagggcgcgcggcgtggacgcgcagccggtcgacggcattcccgcgctgctcgac
gcgctgcgcgccggtggcttcgcgcgcgtgttcaacatcctgcacggccagcatggcggt
ggcgaggatggcgtgctgcagggcgcgttggaggcgctgaacgtgccgtacaccggctcg
ggcgtgctcggctcggcgctgtcgatggacaagccgcgttcgaagcgcgtgtggcaatcg
ctcggcctgccgaccccgaagttcgtggcgctgccgcgcggcgctgaccccggatcgagt
ccggggcaggcggtgcatgcggcggcgaaacaggtcggctttccgctgatcgtgaagccg
gcctgcgaaggatccagcgtgggcgtcacccgcgttttcgaggaatcccagctggaccag
gcggtcgagctggccgcgaagtatccaggtgacctgctgatggaaaccctgatcgagggt
gacgaactgaccgttgccatcctcggtcgccaggtgctgcccagcatccacatcgtgccg
aagggcgcgttctacgactacaacgcgaaatacatcgccgaggacacgctgtacctgtgc
cccggcctggaaggcgatgcggagacggagctgcgcgcactggcgctggccgcgttcgac
gcgctgggctgcaccggctggggccgggtcgacgtgatgcgcgaccgccaaggccgcaac
tggctgctggaggtgaacaccgcacccggcatgacctcgcactcgctggtgccgaaggcg
gccaaggcggccggcatcgactaccaggagctgtgctggcgcgtgctggaaaccagtttc
cgcgatggttcgttcgacgcggatggctctaccgaatcccgaatcccgaatcccggctct
caacagccgaagggctggtcatcccgcgcctccaacggaggcgcccagtga
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