Rhincodon typus (whale shark): 109919771
Help
Entry
109919771 CDS
T06055
Name
(RefSeq) versican core protein-like
Organism
rtp
Rhincodon typus (whale shark)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_C
EGF
hEGF
Sushi
cEGF
AFP
EGF_3
Motif
Other DBs
NCBI-GeneID:
109919771
NCBI-ProteinID:
XP_048450950
LinkDB
All DBs
Position
3:complement(90653333..90697377)
Genome browser
AA seq
1524 aa
AA seq
DB search
MEVADKSPATAQVNEKESVDTLLSAPTKSMDVTFPYVTVMPAFEEMSQHARTEATKVITM
TEELPVKDIELSDKFPATEKSAKAEKDLQTPVPFVDLEGSGEGIFTFKQVVTDVSTPETH
SHSVSVTSKTSLEEEAPYTAVTAGHEAEARISTSDLPKIEAETQKTLIKIFTEAADKSPA
ITLVDKVQTVDTLFSVSTKAPHVTVTPAVEQKSEEFTSESTKSMTGMYSLPGKVIIKPSG
TSAAIEETTEMMEVSHKQPPLSDEESSGEKVEQEHISASVHPGVGDGSESEEDSTERTSA
ITIQSSEETVEVGLHTTISLHEQQSTVEAIHSEESQQEAEVQSITGAVHQEKTDMSTLKG
QEKTEVIGKPQSKPSVEYPRPSPTPREPLIFTTEASKQTVLPFIEEASSELTKVQFAKEF
SPTSALIGEEFSPKQPKVFVSSIHVKETPLVTTPTLVSTDRVKDKFQPRLVDRTRIQTDD
EMNYTQKIISSTARSEEDYKKIESLLKTVKAELKETQEGTTRPDEKTLESTGFVWDGGDD
QLSEDKITDSSLAPQNFSVIYMNGKENGISIIEEQKFGTTTVSDFIIDVDKKLEDAKGEI
ESINVDKIDEETPTYLPTHNATKRLEIIQTAEPEHIATYASSDIETDITGSGDLPSSLIP
VTLEPKVIISTAATTVSLDRIGKDVSEPEVTKDMLPLFKTTILPQHVSVSSTEGIRKNVS
KIIPVEEDGDTYTSTVQTSIEYVDGQSTPSEKSPTYQVVNDSKAHVSEGYIHPMTERKDI
EGSTASSLLQEEFSGDDFLSVEDRAYTHLLDKAAQTQTSSELGFEFANTVSSPTKATSTE
KQAVTLTELLTEHVSANNFTSSSTEEGISIELPDQKHGKELVMIATMEPTTQQIKMEEPE
SLPSPSIFDYVSTKEEIGVSQIITQPIISQQEFSYTMDKRTEETVSNTMSLLDLSSKLQL
AESSASVSTPIKIFEKESPVPQTTTSPSAVGETPLYEIHIHASEHITGTVLPPDADTAMP
GEVDASPAQNNYVEISKDTSVSATSLRPATEQKDPEKDIKESVKVTTISSSLHENTSQQL
ELFVKQDLKDTTVVTHAKISELRTPPSIHPSPFVEGSLTDGTDIHTDVPPPSPLDRSEDG
RSTQTPQLLIKSTDDSGKIIFHLVQIDNKTTETTLVSTARSKTTSEIESREHSKTGEPMI
TGVPEDGETVHVPVLIAQVNPCEKQPCQHGGSCYPRETSYICTCLPGFTGDHCELDIDEC
QSNPCRNGATCIDGANCFSCICLPSYGGALCEQDTQVCDFGWHKFQGHCYKYFGHRRAWE
DAEKECRLQGGHLASILTHEEQLFVNRIGQDYQWIGLNDKMFEHDFRWTDGSPLQYENWR
PNQPDSFFSTGEDCVVMIWHEDGQWNDVPCNYHLTYTCKKGTVACGQPPVVKNARMFGKL
KPRYEINSMIRYHCSAGFIQRHFPVIKCRTNGYWDKPKVACITPSTYQRNSRRYIHGLYR
KGMKSSQEPIRHHHRWIRKFHSGH
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggcagacaaatctcctgcaacagctcaggtaaatgagaaggaatctgttgat
acattattgtcagccccaacaaaaagcatggatgtgacctttccctatgtcactgttatg
cctgcatttgaagaaatgtctcaacatgccagaacagaagcaacaaaagtgatcaccatg
actgaagagctgccagtgaaggatattgagctttcagataaatttccagctactgagaaa
agcgcaaaagcagagaaagatttgcagacaccagtgccgtttgtagatttagaaggttct
ggtgaaggaatatttaccttcaaacaagtagttacagatgtttccactccagaaacacac
agccattcagtctcagtgacgagcaaaacatcactggaagaggaagctccttatacagct
gttactgctggccatgaggcagaagctaggatatccacatctgatttacccaagatagag
gcagagacacaaaaaacattgataaaaatatttactgaagcagcagacaaatctccagca
ataactttggttgacaaagtgcaaactgttgatacattgttttcagtctcaactaaagct
ccccatgtcactgttacaccagcagttgaacagaagtctgaagaatttacatcagaatca
acaaaatcaatgactggaatgtacagtttgcctggaaaagtgattataaagccttcaggg
acctctgcagcaattgaagaaaccacagaaatgatggaagtttcccacaaacagcctcct
ctttcagatgaagaaagttctggtgaaaaagttgaacaagaacatatttcggcatcagtt
catcctggtgttggagatggcagtgaaagtgaagaagactcaactgagagaacaagtgcc
atcacaatacaaagcagtgaagaaactgtggaagttggcttacacacaacaatttcatta
catgagcagcaaagcactgttgaagctatccacagtgaggaatcacaacaagaagcggag
gttcagtccattactggggctgtgcatcaggaaaaaactgacatgtccacgctcaaagga
caagagaaaactgaggttattggtaaaccacaatcaaaaccatctgttgaataccctagg
ccttcaccaactcccagggaaccactcatatttactactgaagcaagcaaacaaacagtc
cttccttttatagaagaagcttctagtgaattaacaaaggtgcagtttgccaaagagttt
tctcctacctctgctctgattggtgaagagttctcaccaaaacagccaaaagtatttgtc
agtagtatacatgtaaaagaaaccccactggtaactaccccaactcttgtttcaacagac
agggtaaaggataaatttcagcctaggttggttgataggacaagaatccaaacagatgat
gaaatgaattatacacaaaaaataatttctagtactgccaggagtgaagaggattataaa
aaaattgaatcattgttaaaaacagttaaagcagagctaaaagaaacccaggagggaact
acaagacctgatgagaagacattagaaagtacgggttttgtttgggatgggggagatgac
caattatctgaagataaaattacagatagttctctagcacctcaaaactttagtgtaatt
tatatgaatggtaaggaaaatggaattagtattatagaagaacagaaatttggaaccact
acagtatcagattttataattgatgttgacaaaaaattagaagatgctaaaggagaaatt
gaaagtataaatgtggataaaattgatgaagagactccaacttatctgccaactcataac
gccacaaaaagattggaaattatccaaactgcggaaccggagcacattgccacttatgcc
tcgagtgatattgagacagatattactggatctggagatctgccttcatctttaatccca
gtaacacttgagccaaaagttatcatcagcacagctgccacaacagtttccttggataga
attgggaaagatgtgtctgaaccagaggtgacaaaggacatgttgccattatttaagacc
acaattttacctcaacacgtatctgtttcatccacggaaggcataaggaaaaatgtgtca
aaaataattcctgttgaagaagatggtgacacatacacatcgactgtgcaaacttctatc
gagtatgtagatggtcaaagcacgccttcagaaaaatcaccaacttatcaagtagtcaat
gattcaaaggcccatgtcagtgaaggatacattcatcctatgacagaacgtaaggacatt
gaaggctcaacagcatccagtttattacaggaggaattttctggagatgattttctaagt
gttgaagatagagcatatacccatttactggataaggctgcccaaacacagacttcatct
gaacttggttttgagtttgctaacacagtaagttcaccaacaaaagcaacttctactgaa
aagcaagctgtgactttaacagagctgcttacagaacacgtatctgctaataactttact
tcctcttctacagaagaaggtatatcaatagaattgccagaccagaagcatggtaaagaa
ttggtgatgattgcaacaatggaaccaacaacacagcaaattaaaatggaagaaccagaa
agtttgccttcaccatcgatctttgactatgtttctacaaaagaagaaattggagtaagt
caaataattacacaaccaattattagtcagcaagaattttcatacacaatggacaagaga
actgaggagactgtgtctaatacaatgtctttgttagatttgagttcaaaattacaatta
gcagaaagttctgcttcagtctcaacgccaatcaaaatatttgaaaaagaatcacctgtg
ccacaaacaaccacttccccaagcgcagtgggtgaaactcccttatatgaaattcacata
catgcctcagaacacattacagggactgtattgccaccagacgcagatactgccatgcct
ggagaagtagatgcatcaccagcacagaataattacgttgaaatttctaaagacacttca
gtcagtgcaacatctttaaggccagctacagaacaaaaggatcctgaaaaggatattaaa
gaatctgttaaagtcacaacaatatcatcctctttacatgagaacacttcacagcagctg
gaactatttgtgaagcaagatctcaaagatacaacagtagtgacacatgcaaaaataagt
gaattaaggactcctccttcaatacatccttcaccttttgtagaagggtctctaacagat
ggcaccgacattcacacagatgtacctcctccatcacccctggacagatcagaagatgga
agatctacacaaacacctcaactattgataaagagtactgatgattctggtaaaattatc
tttcatttggtacaaattgataacaaaactactgaaaccacattggtgtcaacagctcgc
tcaaagaccacctctgaaatcgaatctcgggagcacagtaaaacgggtgaaccaatgatt
actggtgtgccagaggacggtgagactgttcatgtaccagttctgatagcacaagttaat
ccctgtgaaaaacaaccttgccaacatggaggcagttgttacccacgagaaacaagttat
atttgcacctgtttgccaggattcaccggggatcattgtgaactagatatagatgaatgt
caatccaatccttgccgtaatggagccacatgtattgacggtgccaactgtttcagttgt
atctgcttaccaagctatggtggtgctttgtgtgaacaagatacgcaggtgtgtgatttt
ggctggcacaaattccaaggacactgctacaaatactttggtcaccggcgggcttgggaa
gatgcagagaaggaatgtcgtctgcagggtggtcacttggccagcatcctcacacacgaa
gagcaactttttgtgaaccgtattggccaggactaccaatggattggcctaaatgacaaa
atgtttgaacatgatttccgttggactgatggaagccctctgcaatacgaaaactggcgc
ccaaaccagcccgacagtttcttttctactggagaggactgtgttgttatgatctggcat
gaagatggccagtggaatgatgttccatgtaactaccacctaacctacacttgtaaaaaa
ggcacagttgcctgcggtcaacctcctgttgtgaagaatgccaggatgtttgggaaattg
aaacctcgatatgaaataaattcgatgatcaggtaccactgcagtgcaggctttatccaa
cgccactttccagtcattaaatgtcgaaccaatggatactgggataaaccaaaagtcgcc
tgcataacaccttcaacatatcagcgaaactcccgaaggtatattcacggattataccgg
aaaggaatgaaaagttctcaagaacctatccggcatcatcatcgctggatcaggaaattc
cattcagggcactga
DBGET
integrated database retrieval system
