Rhincodon typus (whale shark): 109920161
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Entry
109920161 CDS
T06055
Symbol
slit2
Name
(RefSeq) slit homolog 2 protein
KO
K06839
slit 2
Organism
rtp
Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
rtp00536
]
109920161 (slit2)
Glycosaminoglycan binding proteins [BR:
rtp00536
]
Heparan sulfate / Heparin
Axon guidance molecules
109920161 (slit2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
EGF
Laminin_G_2
Laminin_G_1
LRR_9
hEGF
LRRCT
LRR_1
LRRNT
DL-JAG_EGF-like
EGF_3
JAG1-like_EGF2
Motif
Other DBs
NCBI-GeneID:
109920161
NCBI-ProteinID:
XP_048458400
LinkDB
All DBs
Position
1:complement(96897562..97323618)
Genome browser
AA seq
1530 aa
AA seq
DB search
MDAFGFCRIFSWFLLVIGTSTWTEVAGQVCPSHCTCAGPAVDCHGLGLRSVPKSIPRNTE
RLDLNGNNITRITKSAFSGLRHMRVLQLMENQITTIERGAFQDLKELERLRLNRNNLQVL
PELLFLGTPKLYRLDLSENHIHAIPRKAFRGAVDIKNLQLDYNQISCIEDGAFRALRDLE
VLTLNNNNISRLSVASFNHMPRLRTFRLHSNNLYCDCHLAWLADWLRQRPRVGLYTQCTG
PGHLRGHNVAEVQKKEFICSDDDKGHQSLTMQSCSVHSKSCPAVCTCSNSIVDCRGKGLT
EISSKLPESITEIRLEQNSIKTIPPGAFSPYKRLRRIDLSNNHISEIAPDAFQGLRSLNS
LVLYGNKITELPKGLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA
KGTFAPLRAIQTLHLAQNPFICDCHLKWLADYLHANPIETSGARCSSPRRLANKRIGQIK
SKKFRCSGTEDYRSKLSGDCFLDLACPEKCRCEGTTVDCSNQRLTKIPDHIPQYTAELRL
NNNEFTVLEATGIFKKLPQLRKINLSNNKITDIEEGAFEGASGVNELLLTGNRLETVHRK
MFKGLDSLKTLMLRSNKIGCVSNNTFTGLSSVRLLSLYDNQITTISPGAFDTLHSLSTLN
LLANPFNCNCHLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDASALFM
IQRVSMSVTSHPLAFCLDQVSPVNQQPLSDTVEQKLMCFRYLDGNQFVMVPKELTTFKHL
LLIDLSNNRISTLYNQSFSNMTELLTLILSYNRLRCIPVRTFDGLKSLRLLSLHGNDISS
IPEGAFNDLSSLSHLALGANPLYCDCNMQWLSDWVKSGYKEPGIARCAGPGDMTDKLLLT
TPSKKFECQGPIDINILAKCNPCLSNPCKNDGTCNNDPVDFYRCTCPYGFKGQDCDVPIH
ACVNSPCKNSGTCHLKEGEKDHFWCSCADGFEGEECTINIDDCEDNDCENNSTCVDGINN
YTCLCPPEYTGELCEEKLDFCAPELNACQHDSKCIMTLKGFKCECTPGYVGEHCDIDYDD
CQENKCKNSAQCIDAVNGYTCICPEGYSGLFCELTPPMVLPRTSPCDHFECQNGAQCIEI
GNEPVCQCLAGYEGDKCEKLVSVNFVNRDSYLQIPSPNIQLQPNISLQVATDEDNGILLY
KGDNDHIAVELFRGRVRVSYDTGTYPASAIYSVETINDGNFHSLELVAADQMLSLVIDGG
NPKTINNLARQSTLNIDSPLYVGGMPTKTNFAALRQGPGQNGTSFHGCIRNLYINNELQD
FKKVPMQIGILPGCEPCQKKMCQHGTCHTIGQSSFTCECEGGWTGTLCDQQTNDPCQGNK
CVHGICVPINAFSYSCKCQMGFKSVLCDEEEELFNPCQNIRCKHGKCRLSAVSRPYCECN
SGYTGENCDKEISCRGERIRDYYQKQQGYAACQTTKKVSRLECRGGCDNGQCCGPLRSKR
RKYSFECTDGSSFVEEVEKVVKCGCLQCSL
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgtttggattctgcaggattttctcctggtttctccttgtgatcgggacgagc
acttggactgaagttgccggccaagtttgtcccagtcactgtacctgtgccgggccggct
gtggattgtcacggactgggactgcgctctgtccccaaaagcatccctaggaacaccgag
agactggatttgaatgggaacaacatcacacggatcaccaaatcagccttctcaggattg
agacatatgcgagttctacagctcatggaaaaccaaataaccaccattgagaggggagcc
tttcaggatctgaaggagctggaaagactccgcctgaatagaaacaacctacaggtcttg
ccagagttgcttttcctgggaactccgaagctctacagacttgatctgagcgaaaaccac
attcatgctattccaaggaaggctttccgaggagctgtggacatcaaaaatttgcaactg
gattacaaccagatcagctgcattgaggatggagcattcagggctctgcgtgacctggaa
gtacttacccttaacaataacaacatttctcgactctcagtggcaagcttcaaccacatg
cctaggcttagaaccttccgactccattcaaacaacctgtactgcgactgccatttagca
tggcttgctgattggctgcgacagcgccctcgagttgggctgtacactcagtgcaccggg
cctgggcacctgagaggccataatgttgcagaagtacaaaagaaggagttcatttgctct
gatgacgacaaaggtcaccagagtttaacaatgcaatcctgcagtgtccattcaaagtct
tgtccagcggtctgcacatgtagcaacagtatcgtggattgtcgtggcaagggtcttact
gagatatcgagcaagcttccagaaagcatcacggaaatacggctggagcaaaactcaatc
aaaaccatccctcctggagccttctcaccctacaagagattgcgaagaatagacctgagc
aacaaccacatttcagaaattgcaccggatgctttccagggattgaggtcacttaactcc
cttgtgttatatggaaataaaatcacagagctccctaaaggcctttttgagggactcttc
tctctgcagttactgttgctgaatgccaacaagattaactgtctgcgagtagatgctttt
caggatctccataatttaaacctcctctctctatatgacaacaagttacagaccattgcc
aaaggcacttttgcacctctgcgtgctatccagactctgcatctggctcagaacccattt
atttgtgattgtcatctgaaatggcttgcggactatctgcacgcaaaccccattgaaaca
agtggtgcccgctgtagcagtcctcgccgtctggcaaacaagaggatcggacagatcaag
agcaagaagttccgctgctcaggcacagaggattacagatccaaactcagcggagactgc
ttcctggatcttgcttgccctgaaaagtgtcgatgcgagggaaccactgtggactgctcc
aatcagagacttacgaaaattcctgatcacatccctcagtacactgcagagttgcgcctt
aataacaatgagtttacagttttggaagccactgggatattcaagaaactccctcagctc
cgtaaaataaacttgagcaataataagattacagatattgaggagggtgcattcgaggga
gctagcggtgtgaatgaattgttactgacaggtaaccgtctggaaactgtgcaccgcaaa
atgttcaaaggactggatagtcttaaaacattgatgctgaggagcaataaaattggttgt
gtgagcaataacacgttcacaggcctgagttctgttcgcctactctctctttatgacaat
cagataactaccatttctccaggagcatttgatactctccactctctgtctacactaaat
ctgctagccaatccttttaactgcaattgccatttggcctggttgggagaatggctaaga
aagaaacgcatagtcacaggaaaccctcgctgccagaagccctatttcttgaaggaaatt
cctatccaggacgtggcaatccaggacttcacatgtgatgatgccagtgccttgtttatg
atacagagagtgtccatgtctgtcacaagccatccgcttgccttctgccttgaccaagtg
tcacctgtgaaccaacagccgctgtctgacactgtggagcagaaactgatgtgtttccgg
tatttggatggaaatcagtttgtgatggtacccaaggaactcaccactttcaagcattta
ttacttattgatttaagtaacaacagaatcagtacactgtacaaccagagcttcagcaac
atgacagagcttctgaccttaattcttagttataaccggctgaggtgtattccagttcga
acattcgatgggttgaaatccctccgtttattgtctttgcatggaaatgacatctcatct
attcctgaaggagcttttaatgacctttcatcactgtcacatttggcccttggtgcgaac
cctttatattgtgactgcaacatgcagtggttatctgattgggtaaagtcaggctacaaa
gagccaggcatagcacgctgtgctggacctggtgacatgacagataaactcctgctcacc
actccttctaagaaatttgaatgccaaggtcccattgacatcaacattctagccaagtgt
aacccttgtctttccaatccatgtaaaaatgatggcacctgcaacaatgacccagtggat
ttttatcggtgcacctgcccatatggattcaagggacaagactgtgatgttcccattcat
gcctgtgtaaatagcccatgcaaaaatagtggaacttgccatcttaaagagggagaaaag
gatcatttctggtgctcatgtgcagatggctttgaaggtgaagagtgcactataaatatt
gatgactgtgaggacaatgattgtgagaataattccacctgcgttgatggaatcaataac
tacacttgcctctgtccacctgaatatacaggtgagctatgtgaagagaaactggacttc
tgtgctccggagctgaacgcttgtcaacatgattccaaatgtatcatgaccctcaaggga
ttcaagtgcgagtgcacacctgggtacgttggtgaacactgtgacattgactatgatgac
tgccaggagaacaagtgtaaaaacagtgcacagtgcattgatgcagtgaatgggtataca
tgtatctgcccagaaggttacagtggtctgttttgtgagctgaccccaccaatggtttta
cctcgcactagcccctgcgatcactttgaatgccagaatggagcccagtgtattgaaatt
ggaaatgagccagtctgccaatgtctggcaggttatgaaggtgacaagtgtgaaaaattg
gttagtgtgaactttgtgaacagagattcctacctccagattccctcaccaaacatacag
cttcagcctaatatctctctccaggttgctacagatgaagacaatgggattttgctgtac
aaaggagacaatgatcacatcgctgtggagcttttccgtgggcgagtacgtgtcagctat
gacacaggtacctatccagcatcagccatttacagtgtggaaacaatcaacgatggcaac
tttcacagtctggagctggtagcagctgatcaaatgttaagtctggtgatagatggagga
aatcctaaaactattaacaatttagccagacaatctacactcaacatagactcccctctc
tacgttggaggtatgcccaccaagacaaacttcgcagctctgcgccaaggaccaggccag
aatggtaccagtttccatggctgcattcgcaatttatatattaacaatgaactgcaggac
tttaagaaagttccaatgcagattggcattctgccaggctgtgaaccctgtcagaagaag
atgtgccagcatggtacctgccacaccattggccagtccagcttcacctgtgaatgtgaa
ggaggttggacaggaaccctttgtgaccagcaaacaaatgatccatgtcagggcaataag
tgtgtacatggtatttgtgtgcccatcaatgccttctcatacagttgtaagtgccagatg
ggtttcaaaagtgtattgtgtgatgaggaagaggagctctttaacccctgtcagaacatc
aggtgtaaacatggaaaatgtaggctttcagctgttagcagaccttactgtgaatgtaat
agtggatacactggagagaactgtgacaaagaaatttcctgtagaggggaacgaatccga
gattactaccagaagcagcaaggctatgccgcttgccaaacaaccaaaaaggtctcgcgg
ttagagtgtagaggtggatgtgacaacggacagtgctgtggtcctctgaggagcaagcga
cggaaatacagttttgaatgcactgacggctcttcatttgtggaggaggtggaaaaagtc
gtgaaatgcggctgcttgcaatgttctttgtag
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integrated database retrieval system
