Rhincodon typus (whale shark): 109931424
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Entry
109931424 CDS
T06055
Symbol
agrn
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp04512
ECM-receptor interaction
rtp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109931424 (agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109931424 (agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
rtp00535
]
109931424 (agrn)
Proteoglycans [BR:
rtp00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109931424 (agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
Laminin_EGF
EGF
SEA
CFAI_KAZAL
Laminin_G_3
hEGF
Motif
Other DBs
NCBI-GeneID:
109931424
NCBI-ProteinID:
XP_048470946
LinkDB
All DBs
Position
31:8693654..9197286
Genome browser
AA seq
2056 aa
AA seq
DB search
MGRQSAGRVAFSLQILLLSLAVDVCWSLCPEKELETREEEANVVLTGTVEEIMNVDPVYN
TYSCKVRVWRFLKGRETVKNEILLDGGNKVMICGFGDPSICDNQVSTGDTRIFFVNVAPK
SMWPAHKNELMLSSSLMRITLRNLEEVENCVEDRPVIKFTPAPATSQDVCRGVLCGFGAV
CERDPKEPTKGMCVCKKSVCPSVIAPVCGSDYSTYSNECELDMAQCTQQRRIKVISKGLC
GSKDPCSEVACGFGSTCIQSSDGQSAKCVCPTTCSGDQESVVCGSDGKDYRNECELNKHA
CDNHKNVYKKSDGPCDPCRDAQNDLNKVCRVHPRAHKPEVLLRPESCPPDHETVCADDGQ
TYESKCAMERMGAIKGITLQKVHSGHCQDRDKCQEECQFNAVCLNRRGITRCSCDRIICD
GAYRPVCGEDNQSYSNDCERKQAECRQKTSIPVKYKGPCDLNTQSPCLSVECEFGAKCIV
KNNKAVCECQQSCQNVYAPVCGNDEHIYGNQCELEAMACILKKRITIKHKGPCDRCGNCQ
FGAICEAETGKCLCPTECVSSEQLVCGTDGNTYNNECELHVQSCIKQRDIQVAAQGECKQ
CGSNICLFGAKCVGGQCVCPRCENQPISSVCGSDGVTYMHLCDLQSASCQQKKIIEVVEE
GSCDDECGSGGSGSGEDNECEQERCRKYGGMWDEDAEDDRCVCEFLCRNVPRNPVCGSDG
VTYDNECALRMARCTMQKDLHVIMPNACEVAIPPSAPQQHCSKSVYGCCLDNVTAAQGVG
LAGCPSTCRCNKYGSYSGTCSPSTGQCSCKPGVGGLKCDRCEPGFWNFRGIVIDEKSGCT
PCNCDAVGAIRDDCEQMTGLCSCKAGITGMKCNQCPDGSNLGQNGCDEDPSVSKSCADLL
CQYGATCVESNERAYCECPPPVCPESKNSKVCGSDGITYANECQLKSIGCRQGTVITITH
QGPCRGTPSRPTIPPTTHSPQTTKWSKMTPSTVISSTREDTILTARVEKDSEVFEAKLTP
RSTAWPAHTTRSYVRSKSSTITRRPVVTAHLTTVRPTTSVIPSEPPDQSGSGGFSGDTDL
EASGDLEASGVDPSGSNETIAEPTPVPIERSSCDNTEFGCCPDGKTPSVDGEGTNCPPTK
IFQGVLILEEVEGQELFYTPEMDDPKSELFGETARSIESALEELLRNSNVKKDFKSVRVR
GLGASKSVRTIVDVHFDPRTTYTSRDVQRALLQQVRLSKKKSIIVKKPEQENIKIVEFDL
APVLFTTTSTTTAATTVPVTTASTLVTLPLAITRRPHFTTRRPKSHQVVKGLPTSPTTTT
KAATPRRPLHSKETPAELPDVYVPKPCDLHPCLHGGTCEDDGKDYTCSCPAGRGGAVCEQ
TIIYHIPEFGGKSYLAFKTMKAYYTVRINLEFRASDLDGLLLYNGQKKGKDFISLALVRG
HVELRFNTGSGTGIIISKTLIEPGKWHQVVVNRNRRNGMLSVDGEPHVLGQSPDGTDGLN
LDTDLFLGGAPEDEMALVTERTAANKGLKGCIRLLDVNNLVYDLEETGSDVLYGSGVGEC
GNNPCQNNPCKNNGKCHVKEAEMFHCECDSGFSGATCADEHNPCDPNPCHPLAKCLVLPE
GGAKCECPMGREGEFCERETEQNQATAFIPEFNGLSYLEMNGIHTFVSELLQKLSMEIIF
LATDRNGMIFYNGQKTDGRGDFVSLNLRDGYLEFKYDLGKGPAVIRSKQRIPLNVWNVVT
VERNGRKGLMIINNGEPINGESPTPHTALNLKEALYVGGAPDLNKFARAAAITSGFKGAI
QKLSIKSIPLLKKENIRKAMEISNYRSHPCTARRSPCRNGGICSPKLGEYDCMCQRGFSG
SQCEKALEEKSAGESESVAFNGRTFIEYHNSVTRSEKAIQINYFELSIKTEATQGLILWS
GKIAERSDYIALAVVDGYVQMTYDLGSKPVTLRSTIPVNTNQWIRIKANRIHRHGTLQVG
NEAPVTGLSPIGATQLDTDGALWLGGIEKLALGSRLPKAYSTGFIGCIKDVIIDRQELQL
VEDALNNPTILHCPAK
NT seq
6171 nt
NT seq
+upstream
nt +downstream
nt
atgggacgacaaagcgccgggagagtggctttctctctccaaatattgctgctgtccctc
gctgtagatgtttgctggagtttgtgcccggagaaggagttggagactagggaagaagaa
gcgaatgttgtcttaacggggacggtggaggagattatgaacgtggatcccgtttacaac
acctactcttgtaaggtacgtgtgtggaggttcctgaaaggccgcgagacagtgaagaac
gagattctcctggatggcgggaataaagtgatgatctgtggctttggcgatccctcaatc
tgtgacaaccaagtttccacgggcgacacccggatattctttgtcaacgtggcaccgaaa
tcgatgtggccagctcacaaaaacgagctgatgctcagctccagcctcatgaggattacc
cttcgaaacctggaggaggtggaaaattgcgtggaagatagacctgtgattaagttcact
cctgcccctgcaacatcacaggatgtatgtcgaggtgtcctctgtgggtttggagctgtc
tgtgagagagatcccaaagagccaactaagggaatgtgtgtctgcaagaaaagtgtctgc
ccgtctgtcatcgccccagtttgtggatccgattattccacatacagtaatgagtgtgag
ttggatatggcccagtgcacacagcagcgaaggatcaaggttattagcaaaggactttgt
ggctcgaaggacccatgcagcgaggtggcctgtggattcggcagcacctgcatccagtca
tctgatggccagtcagccaaatgtgtctgtcccaccacgtgcagtggagaccaggagagt
gtggtgtgcggcagcgatggcaaggattacagaaacgagtgcgagctcaataaacatgcc
tgcgataaccacaagaatgtttacaagaagtctgatggaccctgcgacccatgcagagat
gcacagaatgacctaaataaggtatgccgagtacatccaagagctcacaaacctgaagtg
ctcctgcgcccggaaagctgcccaccagaccacgagacagtgtgcgcggatgatgggcag
acctatgaaagcaagtgtgccatggaaagaatgggagctatcaaaggcattaccctgcag
aaggttcactcaggacactgtcaggatagagacaagtgccaagaagagtgtcagttcaat
gcagtgtgcctcaaccgaaggggcattacgcgttgctcctgtgaccgcatcatttgtgac
ggagcttacagacctgtctgtggagaggacaatcaaagctacagcaatgactgtgagcgt
aagcaagccgagtgtcggcagaaaaccagcattccagtcaaatataagggtccttgcgac
cttaacactcaaagcccctgcctgagtgttgaatgtgagtttggagccaagtgcattgtg
aagaataataaagctgtgtgtgagtgtcagcagagctgccagaatgtgtacgcaccagtt
tgcgggaatgatgaacatatatacggcaatcagtgtgagttggaggccatggcttgtatt
ctgaaaaagcgcatcaccatcaaacacaagggtccctgtgatcgctgtggaaactgccag
tttggtgccatttgcgaggcagaaacaggaaagtgcctttgccccacagaatgtgtaagc
tccgagcagctggtgtgtggcacagacggcaacacatacaataatgaatgcgagctacac
gttcagtcctgcatcaaacaaagggatatacaagttgcagcccagggagagtgcaagcaa
tgcggctccaacatctgtttgtttggagcaaagtgcgtcggtggccaatgtgtctgtcct
cggtgtgaaaaccaacccatttcctcagtctgtgggagcgatggggtcacgtacatgcac
ctgtgtgatctacaatctgcctcctgccagcagaaaaagataatcgaggttgtggaagag
ggttcttgtgatgatgaatgcggttctggagggtcgggatcaggtgaggacaatgaatgt
gagcaggaacgatgccggaaatatggaggaatgtgggatgaggacgcggaagacgaccgc
tgtgtttgtgaattcctctgtcgcaatgtccctcggaatcctgtctgtgggtctgatggg
gtaacctatgacaatgagtgtgcactgaggatggcgcgctgtaccatgcaaaaggacctt
catgtcatcatgcctaacgcctgtgaggttgcaattccaccatctgccccacagcaacac
tgcagcaaatctgtttatggctgttgtctggataatgtaactgctgcccaaggagttggc
ctcgcaggttgtccgagcacctgtcggtgtaataagtatgggtcttacagtggaacatgt
agccccagcactggtcagtgttcctgcaagcccggagtgggtggtctcaagtgtgaccgt
tgtgaaccaggcttctggaatttccgtggtatcgtcatagacgagaaaagcggatgtact
ccttgtaactgtgatgctgtcggggctattcgggatgactgtgagcagatgactggcctt
tgctcttgtaaagctggcatcactggaatgaagtgcaaccagtgtccagatggaagtaac
ttgggtcaaaatggctgtgatgaagacccatctgtatccaaatcatgtgctgatcttctg
tgccaatatggagcaacttgtgtggagagtaatgagcgtgcttattgtgaatgcccccct
cctgtttgtccagaaagtaaaaactctaaggtctgtggctctgatggcataacctacgca
aatgaatgtcagctcaaatctattggatgtcgccaaggcactgtgatcacaatcacacac
caagggccttgtcgaggaactccatcgagaccaaccattcctcctaccacacactctcct
cagacaaccaaatggtcgaaaatgaccccatcaacagtcatatcttcaacaagggaagac
accatattgaccgcgcgagttgaaaaggactctgaagtgtttgaagcaaagctcactcct
agatccacagcatggcctgcacataccacaagatcatatgtcagatccaagtcatccacg
ataaccagacgtcctgttgtcactgcccacctaaccactgtccggcctacaacatccgtc
attccatctgaaccccctgatcagtcaggcagtgggggtttcagtggggatacagatctt
gaagcaagtggtgatctagaagctagtggagtagacccttcgggttccaatgagaccata
gctgaaccaacacccgttccaattgaaaggtcatcgtgtgataacacagagttcggctgc
tgccctgatggaaaaacaccgtctgtggatggtgaaggaaccaactgtcccccgactaag
atattccaaggagttctcattttggaagaggttgagggtcaagaactcttttacacaccg
gagatggacgatcccaagtcggaactgtttggcgaaacagctcgaagtattgaaagtgct
ctggaagaactcttgcggaactcaaatgtgaagaaagattttaagagtgtccgagttcgt
ggtctgggagcaagcaaatctgtgcgcaccattgtcgatgtccattttgacccacggaca
acttacacttcccgagatgtacaaagggcgttgcttcagcaagtaaggctctcgaagaag
aaatctatcattgtaaagaaaccagaacaggagaacatcaaaatcgtggaatttgatttg
gcaccagtgctgtttacaaccaccagcacaaccacggcagccacaacagtcccagtaacc
actgcgtccacgctggtcaccctcccactggcaatcaccaggcggccccactttaccacc
aggcggcccaagtcccaccaagtggtcaaggggcttcccacctctccgacaaccacgaca
aaggcagccacccccaggcggccccttcactccaaggagactcctgccgaactgccagac
gtctacgttccaaaaccttgtgatttacacccttgtctccatggaggcacttgtgaagat
gatgggaaggattacacatgcagctgcccagctggaaggggaggagctgtttgtgagcaa
acaatcatataccatatacctgagtttggaggcaagtcgtacttagcatttaagacaatg
aaggcttactacacagtacgtatcaatcttgagttccgagcctctgacctggatggcttg
ctgctgtacaatggacagaagaaaggcaaagacttcatctctctcgcccttgtgaggggc
cacgtggagctaaggttcaacactggctctggaacaggtatcatcatcagtaaaacactg
atagagcctgggaaatggcaccaagtcgttgtgaaccgtaaccgacgcaatggaatgcta
tcggtggatggtgaaccacatgtgcttgggcaaagtcctgatggaactgatggactaaac
ctggatactgacctgttcctgggaggggccccagaggatgaaatggcactcgtaacagag
agaacagcagcaaacaaggggctgaagggctgcatccgattgctggacgtcaataacctg
gtctatgaccttgaggaaacaggcagtgatgtcctgtatggcagcggcgttggtgaatgt
ggaaataacccctgtcaaaacaacccctgtaagaataatggcaagtgccacgtgaaggaa
gcagagatgttccactgtgagtgtgacagtgggttttcaggagcaacatgtgccgatgag
cacaacccttgtgatcccaacccctgccacccattagcgaaatgtttggtgctacctgaa
ggtggagcaaagtgtgaatgcccaatgggccgtgagggagagttctgcgaaagagaaact
gagcagaaccaggccactgctttcattccagagttcaatgggctttcctacctcgaaatg
aatggaatccatacatttgtcagcgaattgcttcagaagctgtcaatggaaataatcttc
ttggccactgatcgcaatggaatgatcttttacaacgggcagaagaccgatggccgtggg
gactttgtttccctaaacctgcgtgatggttacttagagtttaaatatgacctcggaaaa
ggaccagcagttattaggagtaagcaacgcatcccactgaatgtgtggaatgtggttact
gttgaaagaaatgggcggaaaggattaatgatcattaataatggtgaacccatcaatggt
gaatccccgacgccgcacacagcactgaacctcaaggaagctttgtatgtaggtggagca
ccagatctcaataagtttgcccgtgcagctgcaatcacatctggatttaaaggagcaatt
cagaagctttcaataaaatctattccactgcttaagaaagaaaacattagaaaggcaatg
gagatctccaattaccgctctcatccctgcacagccaggcgtagtccatgccgcaatggc
ggaatctgtagtccaaaactcggggaatatgattgtatgtgccagcgtggtttttcagga
tcacagtgtgaaaaagcacttgaagagaagtccgcaggtgaaagtgaatctgtggctttt
aatggacggacattcatagaatatcacaattcagtaacaagaagtgaaaaagcgatacaa
attaattactttgaactgagcatcaaaaccgaagcaacgcaaggactgattctgtggagt
gggaaaattgctgagagatctgattacattgcactggctgtggtagatggatacgtgcag
atgacctacgacttgggatctaagccagtcacactcaggtctacaattccagtcaacaca
aatcagtggattaggattaaagctaacaggatacacagacatgggactctccaggtggga
aatgaagcccctgtcactgggttatctcctatcggtgccacacagttggataccgatggt
gcactctggcttggtggaattgagaagctagcacttggaagtagattgccaaaggcctac
agcactggtttcataggctgcataaaggatgtaatcatcgatcgtcaggaacttcaacta
gtagaagacgccttgaacaatcccacaatattacactgtccagccaaataa
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integrated database retrieval system
