Rhizobium tropici: RTCIAT899_PC04135
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Entry
RTCIAT899_PC04135 CDS
T02432
Name
(GenBank) DNA primase small subunit-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rtr
Rhizobium tropici
Pathway
rtr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RTCIAT899_PC04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_PC04135
Enzymes [BR:
rtr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RTCIAT899_PC04135
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RTCIAT899_PC04135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AGB74624
LinkDB
All DBs
Position
pRtrCIAT899c:complement(877057..878010)
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AA seq
317 aa
AA seq
DB search
MPGNVSLARRGTFASKKMERMQMAKTPTHDGIKTSVELTHPERVYWPDDEITKQDLLEYY
ALAWERMSPFVINRPLALLRCPDGIDGPRFFQKHAWKGINHNITEIADPEDKDAAKLLKI
ESFDGLAALVQSAALEIHPWGTAIEHWEKPDMIIMDLDPGEDIAWRKVVTAAKEIRERFA
AQGLTSFVKTSGGKGLHVVASVKPQATWPDIKDAAEAIAHAMSADSPQTYLSVASKAKRA
GHIFIDYLRNGRGNTAVAPYSTRARKGTAVSMPVNWEELDGTIGPASFTVKNAASRLGQS
STDPWADFFKTAAPLKV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
gtgccgggcaatgttagtcttgcccggcgcgggaccttcgcgtccaagaagatggagcgc
atgcagatggcaaagacgcccactcatgacggcatcaagacgtcggtggaattgacccac
ccggagcgggtctattggcccgacgacgagattaccaagcaagatcttctcgaatattat
gccctggcgtgggagcgcatgtcgccattcgtcatcaatcgccccctcgccctcttgcgc
tgccccgatggtatcgatgggccacggttcttccagaaacacgcctggaaaggcatcaat
cataacatcaccgaaatcgccgatcctgaagacaaagacgctgcaaaacttttgaagatc
gagagtttcgacgggcttgctgcactcgtccaatcagccgccctggagatacacccctgg
ggcaccgcgatcgagcattgggaaaagcccgacatgatcatcatggacctcgatcccggc
gaggatatcgcatggcgcaaggtcgtgactgccgcgaaagagatcagggagcggttcgcg
gcccagggactgacctcctttgtcaaaacctctggcggcaagggactgcatgtggtcgca
tccgtcaaaccgcaggcgacctggcctgatatcaaggatgccgccgaagcgatcgcccat
gccatgagtgccgatagtccgcagacatatttgtcggtcgccagcaaggcgaagcgggcg
ggccatatcttcatcgactatctgcgcaacggtcgcggcaatactgccgtggcaccctat
tcgacgcgcgccagaaagggcaccgccgtttcgatgccggtcaattgggaggaattggac
ggcacgatcgggcctgcttcctttacggtcaagaatgcagcatcgcgcctcggccaatcg
agcaccgatccctgggcggatttcttcaagacggcagcgccgctgaaggtctga
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