KEGG   Rufibacter radiotolerans: TH63_03090
Entry
TH63_03090        CDS       T03996                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ruf  Rufibacter radiotolerans
Brite
KEGG Orthology (KO) [BR:ruf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TH63_03090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ruf03400]
    TH63_03090
Enzymes [BR:ruf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TH63_03090
DNA repair and recombination proteins [BR:ruf03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TH63_03090
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: AKQ44835
UniProt: A0A0H4VGU1
LinkDB
Position
724570..727143
AA seq 857 aa
MSLKEYNQKRHFNQTPEPEGKGAKNKGDLKFVVQRHQASTLHYDFRLELDGVLKSWAVPK
GPSLNPADKRLAMEVEDHPFSYRTFEGDIPEGNYGAGHVDIWDEGTFHAVDNPSRAEGEK
LMLQELEAGSLHFVLEGKKLKGEFALVKMKGRQKNAWLLLKKQDEFATDAYDAEDFARGG
GAVKPGKVPAKKASTAKEKASPAKAQTGKGKKGEMPHDIVPMTAKLTDGPFDDENWLFEM
KWDGYRAVAEVDNGQVRLYSRNGKSFKQKYAPVVQVLEGLKHQAIFDGELVVLGANGRAD
FQALQNYQNTPSEHLYYYIFDLLYLNGQDLTKVPLLRRKELLAEVLKGAKEPLRYSEHRV
GKGIAFFKEAQQHHWEGIMAKAADSKYHIGKRSQEWLKIKTHLRQEAVIAGFTEPKGSRI
HIGALVLGVYEGKELKYVGQSGSGFNKESLEDLKARLAPLVQEKSPFKVKVGLSRDVTWV
KPELVCELSFAEWTTDGQMRQAIFEGLRVDKKAKDVVHEHAIATPPEADAKEESSKGAKK
TKTMSKQEEEKEGLVLHLDGKDVAISSPDKLYWPEEGITKKDLVEYYQSMAEVLLPYLKD
RPESLLRHPNGITKPGFFQKDAGDHAPDWVQKESIRAESTGQDVNYVVCQDKATLAYLNN
LGCIQLNPWNSRLQHLEHPDYLVLDLDPGENTYDEVVETALVAKQVLDELEIPVYAKTSG
ATGMHLYVPLAAKFPFEQVKELAYALAQRVHARLPKLTSLERSPKERRNQIYIDFLQNAI
AQTIAAPYCVRPKAGATVSTPLQWKEVKTGLHPSQFTIKNVPQRVKKLGDIFMPVLGEGI
DVATYLKRLKQEDHGKK
NT seq 2574 nt   +upstreamnt  +downstreamnt
atgagcttaaaagaatataaccagaaacggcacttcaaccagactcctgagcccgaaggc
aaaggggcaaaaaacaaaggcgacctcaaatttgtggtacagcggcaccaggcttctacg
ctacattatgatttccggctggagctggacggcgtgcttaagagctgggctgtgcccaaa
ggcccctcgcttaaccccgcagacaaacggctggccatggaagtggaagaccaccccttc
agttaccgcacatttgagggagacatccccgaagggaactatggcgccggccacgtggac
atctgggacgaaggcaccttccatgccgtagacaacccttcccgcgcggaaggtgaaaaa
ttaatgctacaggagctagaggccgggagcctgcactttgtgctggaaggcaagaagctg
aaaggcgagttcgcgctggtgaaaatgaaaggccgccagaaaaacgcctggctgctcctc
aaaaagcaggacgaatttgccacggatgcctatgacgccgaggatttcgccaggggcgga
ggggctgtaaaacccggaaaagtgccggcaaaaaaagcgtctacggctaaagaaaaagct
tctccagccaaagcccagacaggcaaaggtaaaaaaggcgagatgccccatgacattgtg
cccatgaccgccaaactcaccgacggcccttttgatgacgagaactggctgtttgagatg
aaatgggatggttaccgggcagtggcagaggtagacaacgggcaggtgagactctattcc
cgcaatggcaagtcctttaagcagaagtacgcccccgtggtccaggtactggaagggctt
aagcaccaggccatttttgacggcgaactggtggtgctgggcgccaatggccgcgccgat
tttcaggctttgcagaattatcagaatactccctcagagcacctgtattactacattttt
gatttgctgtacctcaacgggcaagaccttaccaaagtaccgctgttacggcgcaaggag
ttgttggcagaggttctcaagggggccaaagagcctttgcgctatagtgagcatagggta
ggcaagggtatagctttcttcaaagaggcccagcagcaccattgggaaggcattatggcc
aaagcggcagacagcaaataccatataggtaagcggtctcaggagtggctgaagatcaaa
acccacctgcgccaggaggctgtgatagccggtttcaccgagcccaagggcagccgcatc
catattggggcgctggttctgggcgtatatgagggcaaggaattgaaatacgtgggccag
agcggcagcgggttcaacaaagaaagcctggaagacctgaaggccagactagcaccgctg
gtgcaggaaaaatcgccgttcaaagtcaaggtaggcctttcccgtgacgtgacctgggtg
aaacccgaactggtctgcgaactctccttcgcggaatggaccacggacggacagatgcgc
caagccatttttgagggcctgcgggtagataagaaagccaaagatgtggtgcatgagcac
gccattgccactcccccggaggcagatgcaaaagaggaatcctcaaaaggggctaaaaaa
accaaaacaatgtcaaaacaggaagaagagaaagaaggcctggtactgcacctggacggg
aaagacgttgccatcagcagccccgataaactgtattggcccgaggaaggcattaccaaa
aaggatttggtagagtattaccagtccatggccgaggtactgctgccttacctgaaagac
cgccccgaaagtctgctgcgccaccccaacggcatcaccaaaccgggcttcttccagaaa
gacgccggtgaccacgccccagattgggtacagaaagaaagcattagggcagagtctacg
ggccaggatgtcaattatgtggtttgtcaggataaggccacgctggcgtacctcaacaac
ctgggctgtattcagctcaacccctggaactcgcgcctgcaacaccttgagcacccagat
tatttggtgctggacctggaccccggcgagaatacttatgatgaggtggtggaaactgcc
ctggtagccaagcaggtgctggatgaactggagataccggtgtatgccaaaacctcaggt
gccacgggcatgcacctgtacgtgccgctggctgccaaattcccgtttgagcaggtcaag
gaactggcctatgccctagcgcaacgggtgcacgcccgcctgccaaagcttaccagcctg
gagcgcagccccaaagagcgtcgcaaccagatttacattgattttctgcagaacgccatt
gcccagaccattgcggccccttactgcgtccggcccaaggccggggctaccgtctccacg
cccctgcaatggaaagaagtgaaaaccggattgcacccttcgcagtttactataaagaac
gtgccccaacgcgtcaaaaagctaggcgatattttcatgcccgtgctgggcgaaggcatt
gatgtggccacgtacctgaaaagactgaaacaagaagaccatggaaaaaaataa

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