Rufibacter radiotolerans: TH63_14380
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Entry
TH63_14380 CDS
T03996
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ruf
Rufibacter radiotolerans
Pathway
ruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH63_14380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruf03019
]
TH63_14380
Messenger RNA biogenesis [BR:
ruf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TH63_14380
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
DUF4954
DUF4407
SNARE_assoc
UPF0154
Motif
Other DBs
NCBI-ProteinID:
AKQ46548
UniProt:
A0A0H4VMH8
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Position
3520053..3521645
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AA seq
530 aa
AA seq
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MTIYIILAALVGAGIGFYAGRVMLLKLFKEQEHQATERAKLIIREAEAKAESQKKDKMLE
AKEHFLKLKAEYEEEANRKKNIIIQNENKVKQREQFITKQQEDLKKKEQETDVLKDKLNQ
QLEGFNKRKEDLEAQFRDKQAKVEKDHHEILSRLERIANLSADEAREQLVENLKSEASTR
ASSYIKDIVAEAKLTATKEAKKVVIETIQRTAAEHAIENCVSIFNIESDDIKGKIIGREG
RNIRALEAATGVEIIVDDTPEAIIISGFDPVRREIARLSLHRLVADGRIHPARIEEVVAK
TKKSIDDEIVEIGERTAIDLGIHGLHPELIRMVGRMRFRSSYGQNLLQHSREVANLCATM
AAELGLNVKHAKRAGLLHDIGKVTTEEPELPHAIIGMQLAQQYKEHPDVCNAIGAHHDEI
EMTAMISPIIQSCDAISGSRPGARREIMESYIKRLKELEETAHSFEGVNQCYAIQAGREL
RVMVDADNVTDERASQLSFDISQKIEKEMQYPGQIKITVIREMRSVSYAK
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgactatttatatcattttagcagcgctggtgggcgcgggcatcggcttttatgccggc
cgcgtcatgcttctgaagctcttcaaggagcaggagcaccaagccaccgaacgcgccaaa
ctcatcatccgcgaagcggaagccaaagccgaaagccagaagaaagacaagatgctggaa
gccaaggagcatttcctgaagctcaaagccgagtacgaggaagaggccaaccgcaagaaa
aacatcatcatccagaatgagaacaaggtaaagcagcgcgagcagttcattaccaagcag
caggaagacctcaagaaaaaagagcaggaaaccgacgttctcaaagacaaactcaaccag
cagctggaaggcttcaataaacgcaaagaagacctggaagcccagttccgcgacaagcaa
gccaaggttgagaaagaccaccacgagattctgagccgcctggagcgcattgccaacctg
tctgccgacgaagcccgcgagcaattggtagaaaacctgaagtctgaagcctctacccgc
gcctcttcttacatcaaagacattgtggccgaggccaagctcaccgctaccaaagaagcc
aaaaaggtagtgattgagaccattcagcgcaccgccgccgagcacgccattgagaactgc
gtgtctatcttcaacattgagtctgatgacattaagggcaagatcattggtcgtgagggc
cggaacatccgggcactggaagctgctaccggtgtagagatcattgtagacgacacgcct
gaggcgattatcatctctggctttgacccggtacgccgcgagattgcccgcctttcgctg
caccgcctggtagccgacggacgcattcacccggctcgtattgaggaagtggtggccaag
accaagaaaagcattgacgacgagattgtggagattggcgaacgtaccgccattgacctg
ggcatacatggcctgcaccccgaactgatcagaatggtgggccgcatgcgctttagatca
tcctacggccagaacctgctgcagcactccagagaagtagcgaacctttgcgccaccatg
gccgctgaattaggcctaaacgtgaaacacgccaaacgcgccggtctgttacacgatatt
ggaaaagtaaccactgaggagccggaattaccgcacgctattattggtatgcagctggcc
cagcagtacaaagagcacccagatgtgtgtaacgccattggcgctcaccatgatgagatt
gagatgacggccatgatttcgcctatcatccagtcctgtgatgctatttccggctcgcgc
cctggtgcccgccgcgagatcatggagtcgtacatcaagcgtctgaaagaactggaagaa
accgcccactcctttgaaggcgtgaaccagtgctacgccatccaggccggccgcgagctg
cgcgtgatggtagacgccgataacgtgaccgacgaacgcgcctcccagctgtcttttgat
atctcgcagaagattgagaaagagatgcagtacccaggccagatcaagatcacggtcatc
cgggaaatgcgctccgtttcttacgccaaatag
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