Rhagoletis zephyria (snowberry fruit fly): 108360543
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Entry
108360543 CDS
T08513
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
Pathway
rze03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rze00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108360543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rze03041
]
108360543
Enzymes [BR:
rze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108360543
Spliceosome [BR:
rze03041
]
Complex C
Other components
Step II factors
108360543
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-GeneID:
108360543
NCBI-ProteinID:
XP_017468374
LinkDB
All DBs
Position
Unknown
AA seq
1369 aa
AA seq
DB search
MEELRRLEYLSLVSKICTELENHLGLNDKDLAEFIIDLEEKNPTFDGFRKALHDNGAEFP
DSFVTNLQRIINLMKPGRGDEALEGVSSVKNAKADQLTRMFPGLALPNDKFSKSYSSGGE
SASETSSSDSESEQENELRKETKSKKRDEIDNVMDELEALAPSKRKKSKSVDDTMAELAA
LATDQRKKGDKSEDEDVDDVMAELEALAPSKQIKKDEKPKKSDIDYTMEKLEALAPTAQK
KYENVKIKSEKKKKLDRHSRSRSRERSSRHERSSRCERSRDRRRSRSDSPAERRRNDRRR
RSRTKSKDRDRGHERDRERDRERDRNGRRLRSRSRSRSHCHSTSRRHSRSRSRDHHRRSR
SRERSDRNGRRRSRSRDRHERSGRKRSRSNSTERHGRNEKMPPPAQLPDDPEPGKIYSGK
VANIVPFGCFVQLFGLRKRWEGLVHISQLRSEGRVTDVTEVVQRNANVKVKVMSIAGQKV
SLSMKEVDQATGRDLNPLSHVAPDDDLRDRNPDRPYSGTSLLNLQGGSMDNDESDSRKRV
TRISSPERWEIKQMISSGVIDRSEMPDFDEETGLIQKDEDDEADIEIEIVEEEPPFLSGH
GRALHDLSPVRIVKNPDGSLAQAAMMQSALSKERREQKMLQREQDAVAPTNMSRNWIDPL
PDEDDSRAMTSTRGIGSGATIEVPEWKKHVIGGKKSSFGKKTDMSLLEQRQSLPIYKLRD
DLIKAVSDNQILIVIGETGSGKTTQITQYLAESGFTARGKIGCTQPRRVAAMSVAKRVAE
EFGCRLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLMESDLKSYSVIMLDEAHERTI
HTDVLFGLLKGAVQKRPELKLIVTSATLDAVKFSQYFFEAPIFTIPGRTFPVEVLYTKEP
ETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDTACEILYERMKSLGPDVPELIILPV
YSALPSEMQTRIFDPAPAGSRKVVIATNIAETSLTIDGIFYVVDPGFVKQKVYNSKTGMD
SLVVTPISQAAAKQRAGRAGRTGPGKCYRLYTERAYRDEMLPTPVPEIQRTNLAMTVLQL
KTMGINDLLHFDFMDAPPVESLVMALENLHSLSALDDEGLLTRLGRRMAEFPLEPNLSKM
LIMSVALQCSDEVLTIVSMLSVQNVFYRPKDKQALADQKKAKFNQPEGDHLTLLAVYNSW
KNNKFSNAWCYENFVQIRTLKRSQDVRKQLLGIMDRHKLDVVSAGKNSVRIQKAICSGFF
RNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVVYHELVQTTKEYMREVTTIDPKW
LVEFAPSFFRFSDPTKLSKFKKNQRLEPLYNKYEEPNAWRISRVRRRRN
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggaggagttgcggcgtctcgaatacttatcattggtgtcaaaaatttgcaccgaatta
gaaaatcacttgggtctgaacgacaaggacctagcggaattcataatcgatttggaagaa
aaaaatccaacatttgatggatttcgtaaggccttgcatgataatggagctgaatttcca
gattccttcgttaccaatctacagcgtattattaatttgatgaaacctggccgaggagat
gaggcattagaaggcgttagtagtgtaaaaaatgccaaggcggatcagttgacacgaatg
ttcccaggtttagctttgccaaatgataaatttagcaaaagttatagcagcggtggtgaa
agtgccagtgagacttcttcaagtgattctgaaagtgagcaggaaaacgagcttcgaaaa
gaaaccaagtcaaagaaacgtgatgaaattgataacgttatggatgagctggaagcgctt
gcacctagcaagcgcaaaaagtctaaaagtgtggacgacacaatggcagagttggcagca
ttggcgacagatcagcgaaagaaaggagacaaatcagaggatgaggatgtcgatgacgtc
atggccgaattggaagcgttggcacccagcaaacaaataaaaaaggatgaaaaacctaaa
aagagcgacattgattacactatggaaaaattagaagctcttgcgccaactgctcaaaag
aagtacgaaaatgtaaagattaaatcagaaaaaaagaaaaagcttgaccgacattcacgt
tcacgctcaagggagcgcagctcgcgccatgaacgtagtagcagatgcgaaagaagccgt
gacagacgtcggtcccgttcagattcaccggcagagagacgacgcaatgacaggcggcgg
cgttcgcgtaccaaatcaaaagatcgtgatcgagggcacgagcgtgacagagaacgcgat
cgtgaacgcgatcgcaatggacgtaggcttcgttcgagatcgcgctcgcgttctcattgt
catagcaccagtagacgccattcacgttcacggtcgcgagatcaccaccgtcgttcgcgg
tcgcgtgagcgaagcgatcgtaacggtcggagaagatcgcgttcccgtgatcgccatgaa
cggagtggccgcaagcgctcacgttcaaattccacagagcgccatggtcgtaatgagaaa
atgccaccaccagctcagctaccagatgacccggagccgggaaaaatctactcgggtaaa
gtggcaaatattgtgccttttggctgtttcgtgcagctttttgggttgcgcaagcgttgg
gaaggactggtgcatatttcgcagttgcgctctgaagggcgtgtcaccgacgtaacagaa
gtggtgcaacgtaatgcgaatgtaaaggtgaaagtgatgtctattgcgggacagaaagtg
tcactttcaatgaaggaggttgatcaggccactgggcgcgacctgaatccgctatcgcat
gtagcgccggatgacgatctgcgggatcgcaatcccgatcggccgtatagtggtacttcg
ttgctaaatttgcagggcggcagcatggacaacgatgagagtgactctcgtaagcgtgtc
acgcgcatatccagccccgagcgttgggaaataaaacaaatgatcagctccggagtcatc
gatcgcagcgaaatgcctgattttgatgaagaaacgggcctgatacaaaaagacgaagac
gacgaagccgatattgaaatagaaattgtggaagaagaaccgccattcctttctgggcat
ggccgcgctctgcacgacctgtcccccgtgcgcattgttaagaatccagatggttcgctg
gcgcaagctgccatgatgcagtcagctttatcgaaggagagacgagaacagaaaatgcta
cagcgcgaacaagatgcggtcgcgccgaccaacatgagccgcaattggatcgatcccctg
cccgacgaggatgactcgcgtgctatgacgagtacacgcggcatcggctctggtgcaacg
attgaagtacccgagtggaaaaaacatgtcatcggcggcaagaagtcatcgtttggcaaa
aagaccgacatgtcgctgttggagcaacgtcaatcgctacccatttacaagctacgcgac
gatctcattaaagccgtctcagacaatcaaattttaattgttatcggtgagacgggctcc
ggcaagacgacacaaatcacccagtatttggctgaaagtggttttactgcacgaggcaag
atcggttgtacgcaaccacgtcgtgtagctgccatgtcggtagctaagcgtgtggcagaa
gagttcggttgtcgactgggccaagaagtgggctacaccattcgttttgaggactgcacc
agtcccgaaacggttatcaaatacatgacagatggtatgttgctacgcgagtgtttgatg
gagtctgatttaaagtcttattccgttattatgttggacgaggcgcatgaacgtactata
cacacagatgtactctttggtcttttaaagggcgccgtacaaaagcgaccagagttgaag
ttgatcgtcacttcagccacactagatgcggtaaaattctcgcagtacttttttgaagcg
ccaattttcaccataccaggtcgtaccttcccggtcgaagtgttgtacaccaaagagcca
gagacagactatttagatgcttcgctaattactgttatgcaaatacatttgcgtgagccg
ccaggtgacatactacttttcctcacgggtcaggaagagattgacaccgcctgcgagata
ctctacgagcgcatgaaaagcttaggtcctgatgtacctgaactgattatactgccggtg
tattcggcgctgccatccgaaatgcagacgcgcattttcgatccagcgccagcgggtagc
cgtaaagttgttatagccaccaatattgcagagacttcgctaacaatcgatggcatattt
tatgtcgttgatccgggtttcgtcaagcagaaagtttacaattcaaaaacgggcatggat
tcactggtggtaacaccaatttcgcaagccgcggccaagcagcgtgccggacgtgctggc
cgcacagggcctggcaaatgctatcggttatatacggagcgtgcgtatcgtgacgagatg
ctacccacgccagtgccagagatacagcgtacgaacttggcaatgacagtgttgcagtta
aagacaatgggtataaatgacctgctgcacttcgatttcatggacgcgccacctgttgaa
tccttggtaatggctttggaaaacttgcactcgttatccgcgttggatgacgaaggctta
ttaacacgcttgggacggcgtatggccgaatttccgctggaaccaaatctctcgaaaatg
ttgattatgtctgtggctttacaatgctctgatgaagtgctcacaattgtatccatgttg
agcgtacagaacgtcttttatcggccaaaggataaacaagctttggcggaccagaagaaa
gctaaatttaatcagcccgaaggtgaccatctaacgctacttgccgtctacaacagttgg
aagaacaataaattttcgaatgcctggtgttatgagaacttcgtacaaattcgcactctt
aagcgttcacaggatgttcgcaagcagttgctgggcattatggatcggcataaattggat
gttgtctcggctggaaaaaattctgtacgcatacaaaaagccatctgctcaggtttcttc
cgaaatgccgctaaaaaggatccgcaagaaggttatcgtacactcgtagactcacaagtg
gtctatatacatccatccagtgcgcttttcaatcgtcaacccgagtgggtggtttatcat
gaacttgtacagactaccaaggagtatatgcgtgaagtgaccaccatagatccgaaatgg
ttggttgaattcgcaccatcattcttccgcttctcggatccaacgaaattgagtaaattc
aagaagaatcaacgactcgaaccactgtacaataaatatgaagagcccaatgcttggcgt
atatcgcgtgtacgacgcagacggaactaa
DBGET
integrated database retrieval system
