Rhagoletis zephyria (snowberry fruit fly): 108378908
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Entry
108378908 CDS
T08513
Name
(RefSeq) homeobox protein cut isoform X1
Organism
rze
Rhagoletis zephyria (snowberry fruit fly)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
TMF_DNA_bd
FRP
Motif
Other DBs
NCBI-GeneID:
108378908
NCBI-ProteinID:
XP_017490703
LinkDB
All DBs
Position
Unknown
AA seq
2521 aa
AA seq
DB search
MQPQVPQAAGTADMDLTAVQSMDWFFKKEQFYLLAQFLQQRANLADKDVNPLKDQLTTNT
DTTTSNSTDIPADIDDFSAVAAAALAANSSAASTTTSTATTTDSNSTSTSTTTTTNHHTT
VPPSSKLLSPISAAYSSVAAAAAAAAAAGFNSPNSVHNNNNNTKLLNSVAAAITLHQNGG
NLLAATTTNTPSPSPPLSTDGCSIAAAAAACGNNSVSPLSAALNGVNGCLNPKLFFNHAQ
QMMMEAAAAAAAAVQQQQSPLHSPLQGAQHVDDDEMDEDGCGGGATAVDASKLITSLTAE
MRLVKRGGEEDADGEEEEEEEEEEQQQGEYDNADADENANARKRSKNARDYEDSPEQHKA
AVDNAKTNVCGQRTDDTSLNFSSNDSNKTTSCSVNKSNFARKTRATKASSKLDRAAEIGD
DCVDNDDDGDDNDADHAAEANRMEIDGGESGESGKIDATIKPNAVGSNYAELIAAKDKEI
KALIEEVQRLRTLEQTQLTQIQRLEDHLEVKRQHIIRLEARLDKQQINAALAEAAATATA
SSAIVTPTTTAAASSTLPVTHVVNDDDDDDDDDEGDEQDDEDGEQAAIVAIADTAAVAKI
DLTTTTRAETTATERITDAAADADVDAETVADAELAVDRACEKLTTAMATTATTATATTA
TNNNGSNTTAAAIEVTEPTVGEIKIKKENHSPLDLDVISQQSAIAAAAAAAAAAACANDP
NKFQELLLEGTKALAAAEAFKSAAAGSSATEGTTVAASQPMDDADAGDVTAAASSSNNSS
GGNESKEVDDDDRASPATAIAQLNIMPKIPKIEIVDDDDDDDDEDIEATEHSTMPECANN
ELPEGENPEEACESAAGDADESALPPTIDVDALEAATSVGPTAAPALNAPSEKSDLQALQ
QHVADSTAAAAAAAASCFDENVDTFGTLLGEELVNSYWRGFKMPTAASQSNSSGSASKAP
NASNMFANQLQHRLPQQQPHHHHHQQPHHHPMHHHQHTTLMPHHLHHHQHHHHQQQQQQQ
QQQSASVTQQHGPSSTALLSQLVNSTFSSAPPTSSSSLRTDALLPSHQHHLSHHAQGPAA
PPPPPPPMPSHHHLHQPHLSSDAHPKSSLDASNTSSNSNHELSANANASHALDQRDDHHS
GLNGSGKSLLEDNNNTLCGTPNANAPSAAAMAAAAMAAQPHPHLPPGYLHALPFQFQDRG
HFRFADDLQLPPGASMAGRLGESLIPKSDPMEAKLQEMLRYNMDKYANQPLDTLHISRRI
RELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWGCDDNAV
MLLKSLIPKKDSGLPPYGGREDSMSDDRLAHIFNEASSLIKNSTPGSLQQQLKEAEQRQL
QQEQHRRSAHDDSQHSNEDSKSPHPLCTSPFYKSTSQLKQEQEAAAAAAAQQQQHRLRQE
QELTPDKMARIYQEFLMRTPREAAFPSLLLSPFFSAAGGMPSGCGLPNMMGADENLRLAY
EREMAKLQQQQQQNAAAAAAAGSLPNFPNFSNLMALQQQVLNGAQDLTLTKDPKDAIKIN
GQRSIEHSSNSMDSQSNSNSNAASMSGGGSSSQNNAKDLPHADSLERHSSAGLSLHSRKL
DSSGSHTPVPPPTSSASVSMHGASNSTAPSPLSNSILPPAMTPNDDFAATASPLQRMASI
TNSLITQPPVPPHHTPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQR
LFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAP
EKLMRTGSYSGTPQIPQGLASKMGASLPMQKMMNELKLQEPTQAQHIMQQMQAAAMSAAM
QQHQQQAQSQQQHAAAVQAAQAAAAAQAAHHQSMLLTSPGLPPQHAISLPPTGPTGGNTG
PGTPGSDKKPMMMPIHSPHQANAMRSMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLA
NNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVI
KNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVSGAPPNKKQRVLF
SEEQKEALRLAFQLDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHNQPGVD
NLIPSRENTNSTPFDPVQFRILLQQRLLELHKERMGLSGAPTLPYPPYFAAAALLGRSLA
GMPGAAAAAAAAAAAGAGGEPDLHALNQAFREQMSGLDLTMSSLKRERSVDYDDDLDESH
LSDNESLDGGDGGGDDKSISGDYKDGTSTPRSIQLSAAASYLMGGLSASMRSSSRRKPAA
PQWVNPAGPVPNTDANGMAAAAAAVAAAAAGMAPSAAEQDRIINGVCVMQPSDFSRSEAG
DSPAGIDADAISKRGETDVEQPPSFMEPEVRIKQEKEDCDSDNEVSATAALATAVTTAAA
AASSEEKLKVMSEDKLRMVRVQRHSHEDDAAAAAAAATASGVPTTNASVVTAASAASAWS
Y
NT seq
7566 nt
NT seq
+upstream
nt +downstream
nt
atgcagccacaagtgccgcaagccgctgggacagccgatatggatttgacggctgttcaa
tcgatggattggtttttcaaaaaggagcaattttatctattggcacaatttttacaacag
cgcgctaatttggcggataaggacgtgaaccccttgaaggatcaattaaccaccaacaca
gacacaaccacctccaacagcaccgacataccggccgacatagacgactttagcgccgtg
gccgccgccgcgctagccgccaatagcagcgccgcatccacaaccacctccacagcaaca
acaacagacagcaactccacctccacctccaccacaaccactaccaaccaccacacaaca
gtcccaccaagcagcaagctgctatcgcccatcagcgccgcatatagcagcgtcgctgct
gctgctgccgccgccgcagccgcgggctttaacagcccgaatagcgtgcataataacaat
aacaatacaaagctgttgaacagcgtcgctgcagcgataacattacaccagaacggtggc
aatctactggcggccaccaccaccaacacaccctccccctcgcccccgctatcaactgac
ggttgcagtattgccgctgccgctgccgcctgtggcaataatagcgtttcaccgctgagc
gccgctttgaacggcgtcaacggttgcctcaatccaaagctcttcttcaatcacgcccag
cagatgatgatggaagctgcggctgctgccgccgctgccgtacaacagcagcaatcgccg
ctacattcgcccttgcagggcgcacaacatgtggacgacgatgaaatggatgaggatggc
tgcggcggtggtgcgactgccgtcgatgccagcaagttgattaccagcctcacagccgaa
atgaggttggtaaagcgaggcggagaagaagatgccgacggggaggaggaggaggaggag
gaggaggaggagcaacaacagggagagtacgacaacgcagatgccgacgagaatgccaat
gcgcgcaagcgcagcaagaatgcgcgagattatgaggactcgccggagcagcataaggct
gccgtggataatgccaagacgaatgtgtgtggtcaaagaactgatgatactagcttaaat
tttagcagtaacgatagcaataaaacaactagttgtagtgtaaacaaaagtaattttgca
agaaaaacgagagcaacaaaagccagcagcaagcttgatagagctgctgaaattggtgat
gattgcgttgataatgatgatgatggtgatgacaatgacgcggatcatgcagcggaagct
aatcgtatggaaattgatggcggtgaaagtggtgagagtgggaaaatcgatgcaacaatc
aagccaaatgcggtaggaagcaattatgctgaattaatagctgccaaagataaagagatt
aaagcactcatcgaagaggtacaacgcctgcgcacactcgaacaaacacaactcacacaa
atacaacgtctagaagatcacttggaagtgaaacgtcagcatatcatacgtcttgaagcg
cgactcgataagcaacaaattaatgcagcgcttgccgaagcagctgccacagcaacagct
agcagtgcaatagtgacaccaacaacaacagcagcagcctcctcaacgttgccagtgaca
catgttgtcaacgacgacgacgacgatgatgatgatgatgaaggggatgagcaggatgac
gaagatggcgagcaagctgcgatagttgccattgctgatacagcagcagttgccaaaatt
gatctaaccacaacaacaagagcggaaacaacagcgacggagcgcatcacagatgctgct
gccgatgccgatgtcgatgctgagacagtagctgatgctgaattagcggttgatcgtgca
tgtgagaagcttacaacagcgatggcaaccactgcaacaacagcgacagcgaccaccgca
acaaataataatggcagcaacacaactgcagctgctattgaagtaactgaaccaacagtt
ggcgagattaaaatcaaaaaggaaaaccacagcccactcgatttggatgtgattagtcag
caatcggctatagctgctgctgcagcagccgctgctgccgctgcatgcgccaatgatccg
aacaaattccaggaattgctgcttgaaggcaccaaagcgttggcggccgccgaggcgttc
aagagtgctgctgccggctcaagcgctacagagggaacaacagttgctgccagccaacca
atggacgacgctgatgccggcgatgtcactgccgctgctagcagcagcaataacagcagc
ggcggcaatgaaagtaaagaggtcgacgacgatgatagagcgtcgcccgcaacagccatt
gcacaactgaatatcatgccaaaaatacccaaaatcgaaattgtcgatgacgacgacgat
gatgacgatgaagatatcgaagcaaccgagcatagcacaatgccagaatgcgccaacaat
gaactgcctgaaggtgaaaatccagaggaggcgtgtgaaagcgcagctggtgatgcggat
gagagcgcattaccgcccacaatcgatgtggatgccttggaggctgcgacaagcgttggg
ccgacagccgcgcccgctctcaacgccccctcagagaaatccgatttgcaagctttgcag
caacatgttgccgactccactgcagccgccgccgctgctgctgcgtcatgtttcgatgag
aatgtcgacacgtttggcacgctgcttggcgaagagctggtgaattcgtattggcgtggc
ttcaaaatgcccactgcggccagccaaagtaacagcagcggcagtgcatccaaagcgccc
aatgctagtaacatgtttgccaatcaactacaacaccgcttgccgcagcaacagccacat
catcaccaccatcagcagccacaccaccacccaatgcaccaccatcagcacacaacacta
atgccgcatcacttgcatcaccaccaacaccaccatcaccagcaacaacagcagcagcag
cagcagcagtctgcctcagttacgcagcagcatggaccttcgtccaccgcgctgctcagc
caattagttaattccactttctcatcagcacctcccacttcttcttcttctctacgtaca
gatgcgctcctgccatcccaccaacaccacctcagtcaccacgcgcaagggcccgccgcg
ccaccaccaccaccgccaccaatgccgtcacatcatcacctgcatcagccacacctcagc
agcgatgcgcatccgaagtccagtttggatgcatcaaacaccagcagcaacagtaatcat
gagctatcagccaatgcaaatgcgtcgcacgcgctcgatcagcgcgatgaccaccatagt
gggctaaatggcagcggtaagtcactgctggaggacaacaacaacaccttgtgcggcaca
ccaaacgcaaatgcgcccagcgctgctgccatggcagccgccgctatggccgcgcagcca
catccacacctgccacccggctacttgcacgcgctaccattccaattccaagatcgcggt
cattttcgctttgccgacgacttgcagctgccgccgggcgcctcgatggccggtcgcctc
ggcgagtcactcatacccaagagtgatccgatggaggcaaaattgcaggaaatgctgcgc
tacaacatggacaagtacgccaatcagccgctggacacgctgcacatctcacgccgcata
cgcgagctgctatcggtgcacaacattggtcagcggctattcgccaagtatatactgggg
ctgtcacagggcaccgtgtcggagctgctgtccaagccgaagccgtgggacaagctgacc
gagaagggacgtgacagctatcgcaaaatgcacgcctggggctgtgatgataacgctgtg
atgctgctcaagtcgctcataccgaagaaagattccggtttgccgccatatggtggtcgc
gaggactccatgtctgatgatcgcttggcgcacatattcaatgaggcctcgagcttgatt
aagaactctacgccaggctcactgcagcaacagctaaaggaggctgaacagcggcagctg
caacaggagcaacatcgtcgctcggcgcatgacgactcgcagcacagcaatgaggattca
aaatcgccacatccgctctgcacatcacccttctacaagagcaccagccagttgaagcag
gaacaggaggcggcagcagctgcagccgcacaacaacaacagcatcgcctgcgccaggag
caagagttaacgcccgacaaaatggcgcgaatctatcaggaattcctaatgcgcacacca
cgtgaagccgctttccccagtcttctgctttcgcctttttttagcgccgccggtggcatg
cccagcggctgtggactacccaacatgatgggcgccgatgagaatttacgcctcgcttac
gagcgtgaaatggccaaattgcaacagcagcagcaacaaaatgctgcagccgcggctgct
gctggcagcttgccgaattttcccaacttctccaacttgatggcgctacagcagcaggta
ttaaatggcgcgcaggatctcacgctaaccaaggaccccaaagacgctatcaaaataaat
gggcaacgctccatcgagcattcgagcaactccatggactcgcagagtaatagcaacagc
aatgccgcgtccatgtcaggtggtggtagcagcagccagaataatgccaaagacttgccc
catgccgacagcttggaacgccattccagcgctggtctatcgttgcattctcgcaagctg
gatagcagtggcagccacacaccggttccgccgccaaccagcagcgcttcagtcagcatg
catggtgccagcaattccaccgcgcccagtccactcagcaactcgatactgccgcccgcg
atgacacccaatgatgatttcgccgccaccgctagcccattgcagcgcatggcgtccatc
accaactcgttgatcacacaaccacccgtcccgccacaccacacaccaccgcagcgtccc
accaaagccgtcttgccacccatcacacagcaacagttcgacatgttcaacaatctcaac
accgaggatattgtgcgacgcgttaaggaagcgctctcgcagtactccatctcgcagcgt
ctctttggcgagtccgtgcttgggttgtcgcaaggttctgtatccgatttgttggcccgc
cccaagccctggcacatgctgactcaaaaaggtcgcgagcccttcatacgcatgaagatg
ttcctcgaggacgaaaacgctgtgcacaaattggtggccagccaatacaagattgcaccc
gaaaagctgatgcgcactggcagctacagcggcaccccgcagataccacagggtctggcc
agcaaaatgggcgcctcgcttcccatgcaaaagatgatgaacgaactgaaactgcaggag
ccaacacaagcccaacacattatgcagcaaatgcaggcggctgccatgtccgctgccatg
caacagcaccagcagcaagcacagagccaacagcagcatgccgctgccgtacaggcggcc
caagctgccgcggctgcgcaagctgcacaccaccaaagcatgttattaacctcacccggc
ctcccgcctcagcacgccatcagtctaccgccgactggtcctactggcggcaatacaggc
cccggcacacccggcagcgacaagaagcccatgatgatgcccatacattcgccgcatcag
gcgaacgctatgcgcagcatgcatcagcatatgtcgcccaccgtctacgagatggcggcg
ctcactcaggatcttgacacacaagtcatcacgacaaaaattaaggaagcgttgctagcg
aacaacatcggccagaagatattcggcgaagctgtgctcggcctctcgcaaggctctgtc
tcggaactgctgagcaaaccgaaaccctggcacatgctctccattaagggccgtgagccg
ttcatacgcatgcagctgtggctttcggatgcgaacaatgtcgaacgcctgcaagtaatt
aaaaatgaacgacgagaagcgagcaagcggcgtcgctcgactggccccaatcaacaggat
aacagctcagacacatccagcaatgataccaacgatttctacaccagctctcctgggccc
ggctcggtcggctcttcggttagcggcgcaccaccgaataagaagcaacgtgtgctcttc
tccgaggagcaaaaggaggctttgcgactcgccttccaactcgatccctacccgaatgta
ggtaccatcgagtttctcgccaacgagctcagtctcgccactcgcaccatcaccaactgg
ttccacaatcaccgcatgcgcctcaagcagcaggtgccacacaatcagcccggcgttgac
aatctcattcccagccgcgaaaataccaactcaacgcctttcgatcccgtccaattccgc
atcttgctacaacaacgcctgctcgagctgcacaaagagcgcatgggactgagcggcgca
ccaacgctaccctacccaccttactttgccgccgctgcgctgctcggacgcagtctggca
ggcatgcctggcgccgcggccgccgctgctgcagctgcagctgccggtgccggcggtgag
cccgacttacacgctctcaatcaggccttcagggagcaaatgagcggtctagatctcaca
atgagctcgttgaagcgcgagcgcagcgtggactacgatgacgatctcgacgaaagccat
ctcagcgacaacgaatcgctggacggtggcgatggcggcggcgacgacaagtccatcagc
ggtgattacaaagatggtaccagtacaccacgctccatccaactctccgcagcagccagc
tacttaatgggcggactcagcgccagcatgcgcagcagttcgcgacgaaaaccagctgca
ccgcaatgggtcaatcccgccgggccagtccccaacaccgatgccaatggtatggcagca
gcagccgctgcagtcgccgccgcagcagcaggcatggcgccatctgccgccgaacaagac
cgcataattaatggtgtttgtgttatgcagccgtccgattttagtcgcagcgaagctggt
gactcaccagccggtatcgatgcggatgcgatatcgaaacgcggggaaactgatgtagaa
cagccgccgagcttcatggagcccgaagtgcgtatcaaacaggaaaaagaggactgtgac
agcgacaatgaggtgtctgcgacagcggcactagcaacagcggtgacgacagcggccgct
gcagcgtcaagcgaagagaaattgaaggtgatgagtgaggataagttgcgaatggtgcgc
gtgcagcggcatagccacgaagacgatgcagcagcagcggcagcagcagcaacagctagc
ggagtgcctacaacgaacgctagtgtggtgacagcagcgagcgcagcaagcgcgtggagt
tattaa
DBGET
integrated database retrieval system
