Sphingomonas abietis: PBT88_02830
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Entry
PBT88_02830 CDS
T09690
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sabi
Sphingomonas abietis
Pathway
sabi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PBT88_02830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sabi03400
]
PBT88_02830
Enzymes [BR:
sabi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
PBT88_02830
DNA repair and recombination proteins [BR:
sabi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PBT88_02830
BRITE hierarchy
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WBO23092
LinkDB
All DBs
Position
complement(570069..571481)
Genome browser
AA seq
470 aa
AA seq
DB search
MPLVKLAAEDDFDGWRTAARAAALIGVPPEGLHWQVGDQVADLFAGATEPPLPPAPAGAA
FSVSKTFVALAETVVLHADPERFALLYAMLVRLRDQPRLIEDQTDPLRRRLEEMAKAVRR
DIHKMRAFLRFREVTDADDAPRYVAWFEPEHHIVRANAGFFMRRFATMRWSILTPEIAIH
WDGDTLTQGPGAARADAPEGDPIEEVWKTYYASIFNPSRLKTGAMLKEMPKKYWKNMPET
ALVPALIAGAQARETQMVATARTASGGDAHAALEALRAEASGCQRCPLWQPATQTVFGEG
PADARLLFIGEQPGDQEDLAGRPFVGPAGQLFDRALAEAGVDRARAYVSNAVKHFKFEPR
GKRRIHAKPNGGEIEACRWWIEQERAIIRPTVTVALGATAAQSLLGRAVTISRIRGQPMA
LADGSEGWVTVHPSFLLRLPDEDRRVEEYARFVADLRRIGERVTALADPA
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttgtaaagcttgccgctgaggatgatttcgacggctggcgcaccgccgcgcgc
gccgccgcgctgatcggggtgccgcccgaggggctgcactggcaggtcggcgatcaggtc
gccgatctgttcgccggcgccaccgagccgccgctgccgcccgcgcccgccggcgccgcc
ttctcggtgtcgaagaccttcgtggcgctggccgagacggtggtgctccatgccgatccc
gagcgcttcgccctgctctatgcgatgctcgtccggctgcgcgaccagccccggctgatc
gaggaccagaccgatccgctgcgccgccggctggaggagatggccaaggcggtgcggcgc
gacatccacaagatgcgcgccttcctgcgtttccgcgaagtgaccgacgccgacgacgcg
ccgcgctacgtcgcctggttcgagcccgagcatcatatcgtgcgcgccaatgccggcttc
ttcatgcgccgcttcgcgacgatgcgctggtcgatcctgacgcccgaaatcgcgatccac
tgggacggcgacacgctcacccaaggccccggcgcagcgcgcgccgatgcgcccgagggc
gatccgatcgaggaggtgtggaagacctattatgcctcgatcttcaacccctcccgcttg
aagaccggcgcgatgctgaaggagatgccgaagaaatattggaagaacatgcccgagacc
gcgctggtcccggcgctgatcgccggcgcgcaggcccgcgagacccagatggtcgccacc
gcccgcaccgcgtcgggcggcgatgcccacgccgcgctcgaggcgctgcgcgcggaggcc
tcgggctgccagcgctgccccttatggcaaccggcgacccagacggtgttcggggaaggc
ccggcggatgccaggctgctgttcatcggcgagcagccgggcgaccaggaggatctcgcc
gggcggccgttcgtcggcccggccggtcagctgttcgatcgcgcactggccgaggccggc
gtcgatcgcgcgcgcgcctatgtctccaacgccgtgaagcatttcaagttcgagccgcgc
ggtaagcgccgcatccacgccaagccgaatggcggcgagatcgaggcgtgccgctggtgg
atcgagcaggagcgcgcgatcatccgcccgacggtgacggtcgcgctcggcgccaccgcg
gcgcagtcgctgctcggcagggcggtgacgatatcccggatcaggggccagccgatggcg
ctggcggatggatccgagggctgggtgaccgtccatccgagcttcctgctgcgcctgccc
gacgaggaccggcgcgtggaggaatatgcccgcttcgtggccgatctccggcgcatcggc
gagcgcgtgacggcgctcgccgatccggcctga
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