Sphingomonas abietis: PBT88_07100
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Entry
PBT88_07100 CDS
T09690
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sabi
Sphingomonas abietis
Pathway
sabi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sabi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PBT88_07100 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sabi03400
]
PBT88_07100 (ligD)
Enzymes [BR:
sabi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PBT88_07100 (ligD)
DNA repair and recombination proteins [BR:
sabi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PBT88_07100 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WBO23870
LinkDB
All DBs
Position
complement(1473282..1475798)
Genome browser
AA seq
838 aa
AA seq
DB search
MARSPTKTTSAADSLASYRAKRDFAKTAEPSGATKPTTGNGFLVQKHEATRLHYDFRLEL
DGVLLSWAVTRGPSLDPDDKRLAVRTEDHPLDYATFEGTIPKGQYGGGTVMLWDNGTWES
IASKDPRKTIPEGHLHFILHGHRMKGEWIMIRLKPRGREKGENWLLRKIADEYAGGSDDL
VTTHLTGIESGLTMAEIAAGKTAPKKRASKASTPKPAAKGATSATRPRKAKTAGTPPPFR
AVQLATLVDHVPAGSSWLHEMKYDGYRTLISVGGGDGRAYTRSGLDWTDKFAAIVADAAT
LDVSSALLDGEAVVLDAEGRTSFQQLQGALKDDPGSILYYAFDLLELDGDDLTGLPLVQR
KEKLAALIGAGTEKIRYSDHIVGRGEELFETFCEAGLEGVISKRADAKYIGSRSGSWVKT
KCIKRQEFVIVGWTPSDKQRGFRALLLGVNEDGKLRYAGKVGTGFNADQIEKLMGLMTPL
EVESPTVEAPRAAVRGAHWIKPKLVAEIAFMEVTGDGVLRHSSYLGLRLDKKPEAVVFEK
EAPVAQVATPAPALVRVTNRERVIFPEGKITKGELADYYQAVAAIMLPWAGSRPISLVRC
PQGRGKKCFFQKHDAGSFGDHVHHVGIAEKDGHDEPYLFIDDAEGLVTCVQMGTIEFHGW
GARIEDVEKADRLVFDLDPDEGLDFKDVVSAAFHVQELLGQMGLATFPMVTGGKGIHVIA
PLTPQAEWPAVKDFAHRFALVLAQAEPNRFTAALAKAKRTGRIFVDYLRNQRGATAVMPY
SARARDYAPVAVPITWEELRTLEGAAHWHVGDAAELLKRAASKDLVGWGRADQVLPVL
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgttccccgaccaagacgacatcggcagcggacagtctggcgtcctatcgggcg
aagcgcgatttcgcgaagacggcggagccgtccggcgcgaccaaaccgacaacgggcaac
ggcttcctcgtccagaagcacgaggcgacgcgcctccattatgatttccgcctcgagctc
gacggcgtgctgctgagctgggcggtgacacgcggtccgagcctcgaccccgacgacaag
cgtctcgccgtcaggaccgaggatcacccgctcgactatgcgacgttcgagggcaccatc
cccaagggccaatatggtggcgggacggtgatgctgtgggacaacggcacctgggagtcg
atcgccagcaaggatccgcgcaagacgatccccgagggccatctccacttcattctccac
ggccaccggatgaaaggcgagtggatcatgatccgtctaaaaccaagaggacgggagaag
ggcgagaactggctgctgcgcaagatcgctgacgaatatgccggcggttccgacgacttg
gtgacgacccacctgaccggaatagaaagcggcctgaccatggccgagatcgcggccggt
aagaccgcacccaagaaacgcgcgtcgaaggcgtctacgcccaagccggctgcgaagggc
gcgaccagtgcgacccggccgcgcaaggcgaaaacggcaggcacgcccccgcccttccgt
gccgtccagctcgcgacgctcgtcgatcatgtccctgccgggagcagctggctccacgag
atgaaatatgatggctaccgcactctgatctcggttggagggggagatggccgtgcctat
acgcgctccggactcgactggaccgacaagttcgccgccatcgtcgccgatgcggcgacg
ctggacgtctcatcggctctgctcgacggcgaagcggtcgtcctggacgccgagggccgg
acgagcttccagcaactgcaaggcgcgctcaaggacgatccgggttcgatcctctattac
gccttcgatctgctggagcttgacggcgacgatctgacgggcttgccgctggtccagcgc
aaggagaagcttgccgccctgatcggcgctggaaccgagaagatccgctattccgatcac
atcgtcggtcgcggcgaggagttgttcgagaccttctgcgaggcgggtctcgaaggcgtg
atctcaaagcgggccgacgccaaatatatcggctcgcgctccggcagctgggtcaagacc
aagtgcatcaagcgccaggagttcgtcatcgtcggctggacgccgtcggacaagcagcgc
gggtttcgcgcgctgctgctcggcgtcaacgaggacggaaagcttcgctatgccggcaag
gttggaaccggcttcaatgcagaccagatcgaaaagctgatgggtctgatgacgccgctc
gaggtcgagtctccgacggttgaggcgccgcgcgcggcggtgcgcggcgcccactggatc
aagccgaagctcgtcgccgagatcgcgttcatggaggtgaccggcgacggcgtcctgcgc
cattccagctatctgggattgcggctcgacaagaagcccgaggcggtcgtcttcgagaag
gaggcaccagtcgcgcaggtcgcgacgccggcaccggcgttggttcgggtgacgaaccgc
gagcgcgtgatcttcccggagggcaagatcaccaagggtgaactcgccgattactatcag
gccgtggcggcgatcatgctgccttgggccggcagccgcccgatcagcctcgtccgatgc
ccgcagggacgcggcaaaaaatgcttctttcagaagcatgacgccggcagcttcggcgac
catgtccaccatgtcggcatcgctgagaaggacggccatgacgagccttatctcttcatc
gacgatgccgagggcctggtcacctgcgtccagatgggcacgatcgagtttcacgggtgg
ggcgcccggatcgaggatgtcgagaaggccgatcggctggtgttcgacctcgatcccgac
gagggtctcgatttcaaagatgtcgtgtcggctgcgttccacgtccaggaactgctcgga
cagatgggtctggcgaccttcccgatggtgaccggcggcaagggtatccatgtcatcgcg
ccgctgacgccccaggccgagtggccggcggtcaaggacttcgcgcaccgcttcgcgctg
gtactcgcacaggctgagccgaaccggttcacggcggcgctcgccaaggcgaagcggacg
ggtcgcatcttcgtcgattacctgcgcaaccagcgcggcgcgaccgcggtgatgccgtat
agcgcgcgggcccgtgactatgccccggtcgccgtgccgatcacctgggaggagctgcga
acgctcgaaggggccgcgcactggcatgtcggcgatgccgccgagctgttgaagcgtgct
gcgtcgaaggatctggtcggatggggtcgcgcggatcaggtgctccctgtcctgtag
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