Saccharomonospora xinjiangensis: EYD13_19395
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Entry
EYD13_19395 CDS
T05928
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sacc
Saccharomonospora xinjiangensis
Pathway
sacc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sacc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EYD13_19395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sacc03400
]
EYD13_19395
Enzymes [BR:
sacc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EYD13_19395
DNA repair and recombination proteins [BR:
sacc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EYD13_19395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QBQ62218
UniProt:
A0A4P7CBV5
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All DBs
Position
4175176..4176621
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AA seq
481 aa
AA seq
DB search
MASRLDPYRAKRRKGRTPEPLPDDVEPGEGAGEQFVIHEHHARRLHWDVRLERDGVLVSF
AVPKGLPEQPGTVRLAVHTEDHPLEYATFSGEIPSGEYGAGRMTIWDRGRYETLKWSDHE
VSVVLHGERVHGRYVFFRSRGGGEDGSDWNVIRSDPPDDPEWTPLPEKLRPMLAVAGTLP
DPEHDTEYAYEFKWDGVRALARVEGGRATFHSRRGDDISAAYPELRPLGEHLGGTKVWLD
GEIVAMRDGRPSFAALQNRIHAGEQHARRLSRQHPVTYLVFDLLHLDGRSCLGLPYRLRR
RLLERLDISGEHWQVPPSFTGGGDAVVEAAAEQGLEGVIAKRLDAPYRPGERSRSWVKIT
DLLTSEVVIGGWRPGEGRRSGTFGSLMLGIPDGEGLRYVGQVGTGFDDATLRSLAARLRR
LERRRTPFTTPLPKNRAAGAHWVSPKLVGEVAFKAWTDEGRLRAPTWRGLRPDRDPEETA
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcgactcgatccgtaccgggcgaaacggaggaagggacgcactcccgaacct
ctgcccgacgacgtggaacccggagagggtgcgggcgagcagttcgtcatccacgagcac
cacgcgaggcggctgcactgggacgtgcggctggaacgcgacggcgtgctcgtgtccttc
gccgtgccgaagggccttcccgagcagccgggcaccgtgcgcctcgccgtccacaccgag
gaccatcctctggagtacgccaccttctccggcgagattcccagcggcgagtacggcgcg
gggcgcatgacgatctgggacaggggccgatacgaaaccctgaagtggagcgaccacgag
gtgtccgtggtgctccacggtgaacgcgtccacgggcggtacgtgttcttccgctcccgt
ggtggcggggaggacggcagcgactggaacgtcatccgctccgacccacccgacgatccc
gagtggacacccctgccggagaagctgaggccgatgctggccgtcgcgggaacgctgccc
gatccggagcacgataccgagtacgcctacgagttcaagtgggacggcgtgcgcgcactc
gccagggtcgaaggcggcagagcgacgttccactcccggcgtggcgacgacatcagtgcg
gcctatccggaacttcgcccgctcggcgagcacctcggcggcacgaaggtctggctggac
ggcgagatcgtggccatgcgggacggcaggcccagtttcgccgcgttgcagaaccgcatc
cacgcgggcgagcagcacgcacgccggctgtcccggcagcaccctgtcacgtacctggta
ttcgatctgcttcacctcgacggccgttcgtgtctcggcctgccctaccggctgcgccgc
cggttgctggagcgactcgacatctcgggcgagcactggcaggtacctcccagcttcacc
gggggcggcgatgccgtggtggaggccgcggcggagcagggactcgagggagttatcgcc
aaacggctcgacgcgccctaccgtcccggtgaacgctcccggtcttgggtgaagatcacc
gatctgctcacgtcggaagtggtgatcggcggatggcggcctggcgagggaaggcgttcc
ggcacgttcggctcgctcatgctcggcataccggacggcgaggggctgaggtacgtcggc
caggtcggcaccggcttcgacgacgcgaccctgcggtcgctggcggcccggttgcggcgg
ctggagcgcaggagaacgccgttcaccaccccgctgccgaagaacagggcggcaggtgcc
cactgggtgagcccgaaactggtcggcgaggtggcgttcaaggcgtggaccgacgagggg
aggttgcgcgcgccgacctggcgtggactgcgaccggaccgtgaccccgaggagacggca
cgatga
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