Stenotrophomonas acidaminiphila: AOT14_17700
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Entry
AOT14_17700 CDS
T04107
Name
(GenBank) DNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sacz
Stenotrophomonas acidaminiphila
Pathway
sacz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sacz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AOT14_17700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sacz03400
]
AOT14_17700
Enzymes [BR:
sacz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AOT14_17700
DNA repair and recombination proteins [BR:
sacz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AOT14_17700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALJ28151
UniProt:
A0A0S1AZB1
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All DBs
Position
1947913..1950072
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AA seq
719 aa
AA seq
DB search
MARGHLRFQLFGGKLRGGWHLVRSGARGRQPEWLLFKARDAYAAPLEADDLLDAAPPGRG
PAAGTRPRPVPVRGRRLLAAAAKLPGARRTRAEPAFHAPQLATLVEAVPDGDGWLHEAKW
DGYRLIAQLARDRVRLWSRNALEWTQRLPAIVQALQALDVVAVLDGELVAGAGRQQDFGL
LQASLSGERAAPLSYVLFDILQLGDIDVRGCRQDDRKALLATLLESASPPLVYSSHVADG
QRALAMAVERGLEGIISKRAAAAYRSGRGDHWRKVKHLMSDEFVVVGFTAPKGSRSGLGA
LLLATPVGRRGWRYAGRVGSGFNQYTLDALVRRLSPLARDTPVPAITAGAVGPCRVQWVK
PVMVVEVFHHGTGNHGLLRQASFKTIRADRNVAELRAAAPVPVPEEHSMPDHMPGSSAAA
TDVALTSPSRVVYPDAGIRKQEVFAYYRDMLPWLLPEVVGRPVSVVRCPQGTQRPCFFQK
HLPPGTGHVGTVPIEEEGGTRADYIVVRDAAGLLELVQFNALEFHPWGARADAPDLADRI
VFDLDPGPGVAWARVVAAARQVRDHLRELGLESFVRTSGGKGLHVVVPLRPACEWSQVKA
FARAFAEAMATADPLAYVATASKRQRKGRIFIDYLRNGRGATSVASFSLRARPGAPVAMP
LRWEELGRVRRADAYDIASAPRRMKRMKQHPWGDIDRIRQDLAPIAARLAGRNPRRPDS
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
ttggccagggggcacctgcgcttccagctgttcggcggcaagctcaggggcggatggcac
ctggtgcgttcgggtgcacgtgggcggcagccggaatggttgttgttcaaggcgcgcgac
gcatacgcggccccactggaggcggacgacctgctggacgctgccccgcccgggcggggg
ccggccgcgggcacgcgaccacgccccgtgccggtgcggggccggcgcctgttggcagcc
gcggccaaactgcccggtgcccgccgcacccgcgcagaacctgcattccacgcgccgcag
ctggccaccctggtggaggcggtgccggacggggacggctggctgcacgaagccaaatgg
gatggctatcggctgatcgcgcagctggcccgcgaccgggtgcggctgtggtcgcgcaac
gcgctggaatggacgcagcggctgcccgcgatcgtgcaggccctgcaggcgctcgatgtc
gtggcggtgctggacggcgagctggtggccggggccggacgccagcaggatttcggcctg
ctgcaggccagcttgtcgggtgagcgcgccgcgcccctgtcctatgtgctgttcgacatc
ctgcaactgggcgatatcgatgtccgtggctgccgccaggacgaccgcaaggcgttgctg
gccacgctgctggagtcggcatcgccgccgctggtgtacagctcgcacgtggccgatggc
cagcgcgccctggccatggcggtggaacgcggactggagggcatcatctccaagcgtgcc
gcggcggcttaccgcagcggtcgcggcgaccactggcgcaaggtcaagcacctcatgtcc
gacgagttcgtggtggttgggttcaccgcacccaagggcagccgcagtgggctgggggcg
ctgctgctggccacgcccgtgggccgcaggggctggcgctatgccggccgggtgggaagc
ggtttcaaccagtacacgctcgacgcactggtgcggcggctgtcgccgctcgcccgcgac
accccggtaccggccatcaccgccggggccgtcgggccgtgcagggtgcaatgggtgaag
ccggtcatggtggtggaagtgttccatcatggcaccggcaatcacggcctgctgcggcag
gcgtcgttcaagaccatccgcgccgaccggaacgtggccgagctgcgcgccgcggcgccg
gttccagtaccggaggaacacagcatgcctgaccatatgcccgggtcgtcagctgccgcc
accgatgtggcgctgaccagccccagccgcgtggtgtatccagacgccggcatccgcaag
caggaagtgttcgcctactaccgcgacatgctgccgtggctgctgccggaggtcgtcggc
aggccggtgtcggtggtgcgctgtccgcagggcacccagcgaccgtgtttcttccagaaa
cacctgccgcccggcaccgggcatgtcggcacggtgccgatcgaggaggagggcggcacc
cgcgcggactacatcgtggtgcgcgatgcggccgggctgctcgagctggtgcagttcaat
gcgctggagttccatccgtggggcgcgcgggccgacgcgccggacctcgctgaccgcatc
gtgttcgatctcgatcctggcccgggggtggcctgggcccgggtggtggcagcggcccgg
caggtgcgcgatcacctgcgcgaactgggcctggaatccttcgtgcgcacctccggcggc
aagggcctgcacgtggtggtgccgctgcggccggcctgcgagtggtcgcaggtgaaggcc
ttcgcgcgtgctttcgccgaagccatggcgactgccgatccgttggcctacgtggccacg
gccagcaagcgccagcgcaaggggcgcatcttcatcgactacctgcgtaacggccggggt
gccaccagcgtggcgtcgttctcgttgcgggcccggccgggcgcgccggtggccatgcca
ttgcgctgggaggagctgggcagggtccggcgcgcagacgcctacgacatcgcctcggca
ccacgccggatgaagcggatgaagcagcatccctggggcgacatcgaccggatccggcag
gacctggcgcccattgccgcgcgcctggccgggcgcaacccacgcagaccagattcatga
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