Sphingomonas aerolata: NEF64_03890
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Entry
NEF64_03890 CDS
T08450
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
saer
Sphingomonas aerolata
Pathway
saer03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
saer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NEF64_03890 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saer03400
]
NEF64_03890 (ligD)
Enzymes [BR:
saer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NEF64_03890 (ligD)
DNA repair and recombination proteins [BR:
saer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NEF64_03890 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
USR01006
LinkDB
All DBs
Position
complement(811932..814430)
Genome browser
AA seq
832 aa
AA seq
DB search
MADTPDPLALYNAKRDFARTAEPAGTLTPGNGNSFMVQKHDATRLHWDLRLEIDGVLKSW
AVTRGPSLDPDEKRLAVRTEDHPLSYATFEGAIPAGEYGGGTVMLWDRGTWAPIKGKSAK
DLDKGHLHFVLDGERMKGEWLLIRLKPRAKEKRENWLLRKIDDAAAGGTDTLVDEALTSI
STGRTMAEIAEGKKPARASKAAPPPSSRRKPGPRAKSVAADTPDPGLRQNDGTLPEFRDP
QLCTLVDAVPTGTAWLHEVKYDGYRALVAVANGTARVFTRTGLDWTDKFAGIAAAAAKLP
VKSALIDGEIVAFKNGHPDFSTLKDAISNGGDMTLFAFDLLALDGEDLTGLSNLDRKARL
EPLIPADDDRLRYSDHVIGAGEQLFETMCREGLEGIVSKRADAPYQGKRTKAWLKVKCTH
RQEFVIVGWLPSDKKRGFKSLLLGVREGKTYRYAGKVGTGFDQALMDELREKLDALDRKT
PTVEAPKAAVRGAHWVTPKLVAEIAFAETTPDGVLRHSSFIALREDKAAKDVVAETPAPL
PDAAPETKIKITNRDRVIFDESDVTKGDLADYYAALSGLILPFAGNRPISLVRCPQGRSR
ACFFQKHDAGSFGDAVHQVPIREKDGSTEDYLYVDDADGLVACVQMGTIEFHGWGSSNDT
LEKPDRLVFDLDPDEGLDFDDTKKAAEFLKTQLAELGLVSFAMLSGGKGVHVIVPLTPRA
EWPAVKDFADRFARALASAEPDRFVASMAKAKRKGRIFIDWLRNQRGSTAVMPYSARARA
GAPVAAPVSWSELRDIDTAARWGVRDAEDLIARAGSRGLKGWGVADQVLPDF
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
gtggctgacaccccagaccccctcgcgctctacaatgccaagcgggacttcgcgaggacc
gccgaacccgccggcacgctgacccccggcaacggcaacagcttcatggtgcagaagcac
gacgccacccgcctccactgggacctgcgcctggagatcgacggcgtcctcaaaagctgg
gcggtcacccgcggccccagcctcgatcccgacgaaaagcgcctcgcggtccgcaccgag
gaccatcccttgagctacgccactttcgaaggcgcgatccccgcgggagaatatggcggc
ggcacggtgatgctgtgggaccgcggcacctgggccccgatcaaggggaagtcggcgaag
gacctcgacaaggggcatctccacttcgtcctcgatggcgaacggatgaaaggcgaatgg
ctgctgatccgcctgaaaccccgcgcgaaggaaaagcgcgagaactggctgctccgcaag
atcgacgacgccgcggcgggcggcaccgacacgctggtcgacgaagcgctgacgagcatc
tcgaccgggcgcacgatggcggagattgccgagggcaagaagccggcacgcgcgagcaaa
gcagcccctcccccgtcatcccggcgaaagccgggacccagagcgaaaagcgtcgcggcc
gatactccggatcctggccttcgccagaatgacggcacgcttcccgaattccgcgacccc
cagctctgcacgctcgtcgacgccgttcccaccggcaccgcctggctgcacgaggtcaaa
tatgacggctaccgcgcgctcgtcgcggtcgcgaacggcacggccagggtcttcacccgc
accggcctcgactggaccgacaagttcgccggaatcgccgccgctgccgcgaagctcccc
gtaaaatccgcgctgatcgacggcgagatcgtcgccttcaagaacggccaccccgatttc
tcgacgctgaaggacgcgatctccaacggcggcgacatgaccctgttcgcgttcgacctg
ctcgcactcgacggcgaggacctgaccggcctgtccaatctcgaccgcaaggcccggctc
gaaccgctgatcccggccgatgacgaccgcctgcgctattccgaccacgtcatcggcgcg
ggcgagcaactgttcgagacgatgtgccgcgagggcctcgaaggcatcgtctcgaaacgc
gccgacgcgccctatcagggcaagcggaccaaggcgtggctcaaggtcaagtgcacgcac
cgccaggaattcgtcatcgtcggctggctcccgtccgacaagaagcgcggcttcaagtcg
ctgctgcttggtgtccgcgagggcaagacctatcgctatgcgggcaaggtcggcaccggc
tttgaccaggcgctgatggacgagctgcgcgagaaactcgatgcgctcgaccgcaagacg
ccgacggtcgaggccccgaaagccgcggtccgcggcgcgcactgggtcacgcccaagctg
gtcgccgagatcgcctttgccgaaaccacccccgacggcgtgctgcgccattcgagcttc
atcgctctgcgcgaggacaaggcggccaaggacgtcgtcgccgagacccccgccccgctc
cccgatgctgcgcctgagaccaagatcaagatcaccaaccgcgaccgcgtgatcttcgac
gagtccgacgtcaccaagggcgatctcgccgattattacgccgcgctgtcgggcctcatc
ctccccttcgcgggcaaccgcccgatcagcctcgtccgctgcccgcagggccggtcgcgc
gcctgcttcttccagaaacacgatgccggcagcttcggcgacgcggtccatcaggtaccg
atccgcgagaaggacggatcgaccgaggactatctctatgtcgacgatgccgacgggctg
gtcgcctgcgtccagatggggacgatcgagttccacgggtggggatcctccaacgacacc
ctcgaaaagcccgatcgcctggtcttcgatctcgaccccgacgaggggctcgacttcgac
gataccaagaaggccgcagagtttctgaagacgcagctcgccgaactggggctcgtcagc
ttcgcgatgctgtcgggcggcaagggcgtccatgtcatcgtcccgctcacccccagggcg
gaatggcccgcggtcaaggatttcgccgaccgtttcgcgcgggcgctggcaagtgccgag
cccgaccggttcgtggcatcgatggccaaggccaagcgcaagggccgcatcttcatcgac
tggctgcgcaaccagcgcggcagcaccgcggtgatgccctattccgcccgcgcccgcgcc
ggcgcgcctgtcgccgcccccgtatcatggagcgaattgcgcgacatcgacaccgccgcc
cgctggggtgttcgcgacgccgaagacctgatcgcacgcgccgggtcgcgcgggttgaag
ggctggggtgtggcggaccaggtgctgccggatttctaa
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