Simiduia agarivorans: M5M_07325
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Entry
M5M_07325 CDS
T02281
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
saga
Simiduia agarivorans
Pathway
saga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5M_07325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saga03019
]
M5M_07325
03016 Transfer RNA biogenesis [BR:
saga03016
]
M5M_07325
Enzymes [BR:
saga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
M5M_07325
Messenger RNA biogenesis [BR:
saga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M5M_07325
Transfer RNA biogenesis [BR:
saga03016
]
Prokaryotic type
tRNA degradation factors
M5M_07325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_2
KH_2
Motif
Other DBs
NCBI-ProteinID:
AFU98660
UniProt:
K4KKD8
LinkDB
All DBs
Position
complement(1640497..1642632)
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AA seq
711 aa
AA seq
DB search
MNPVIKSFQYGSDTVTLETGRVARQASGAVIATIGETSVLCTVVGAKEAKEGQDFFPLSV
HYQEKAYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGFKNEVQVVCTVVSAE
KNVDPDICAMIGTSAALAISGIPFAGPIGAARVGYTQADGYILNPTYSALKTSELDMVVA
GTKDAVLMVESEANELPEDIMLGAVLYAHQEMQAVVQAVSELARDAGKPVWDWSAPAENT
ELKAALAKGFEDSIGVAYRITDKAKRYDRLGELRSQAIEELVNEDAGVSKDDVREAFAKL
EKNIVRSRVVAGEPRIDGRDAKTVRAIEVEVGVLPKAHGSALFTRGETQALVVATLGSAR
DAQIIDALEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRGVAASLPNMDD
FPYSLRVVSEITESNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLVKEDNGFAVLTD
ILGDEDHLGDMDFKVAGTANGVTALQMDIKIEGITEEIMEIALEQALHARLHILAEMNKV
ISAPRGEINDNAPRFEKIKVDPDKIRDIIGKGGAVIRAMTEETGASIDIEDDGTVTIFGQ
TGEVIRDVLDRIGAITAEAEVGEIYEGTVVRIVDFGAFVNFLPGKDGLVHISQIAEERVN
DVNDYLKEGQVVRVKCLDVDQRGRIKLSIKEAKAEEGGADAPAASEEASAE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctgtaatcaaatcgtttcaatacggaagtgacaccgtaactctggaaaccggt
cgcgttgcgcgtcaggccagcggtgcggtcattgcaactatcggcgaaacttcagtgctg
tgtactgtagtcggtgccaaagaagccaaagagggtcaggacttcttccctctgtctgtg
cactatcaggaaaaagcctacgcggcgggtaaaatccccggtggttttttcaagcgcgaa
ggtcgccccagcgaaaaagaaaccctgacctcgcgtctgatcgaccgtcccatccgcccg
ctgttccccaatggcttcaagaatgaagtgcaggtggtgtgtactgtcgtttccgcagaa
aagaatgtcgatcccgatatctgcgccatgatcggtacctcggcggccctggccatttcc
ggtattccctttgcgggccccattggtgctgcgcgcgtgggttacacccaggccgacggt
tacatcctgaaccccacctacagcgcgctgaaaaccagtgagctggacatggtggttgcc
ggtaccaaagacgccgtgctgatggttgaatcagaagctaacgaattgccagaagacatc
atgttgggtgccgtattgtacgcccatcaggaaatgcaggccgttgtgcaggcggtgagt
gaactggcccgcgatgcaggcaaacccgtgtgggattggtctgcaccggctgaaaacact
gaattgaaagcggccctggcaaaaggtttcgaagactctatcggcgttgcttaccgcatt
actgacaaagccaagcgttatgatcgtttgggcgagctgcgcagtcaggctattgaggag
ctggtcaatgaagacgccggcgtttccaaagatgatgtgcgcgaagcctttgccaagctc
gaaaaaaatattgtgcgttcacgtgtagtggccggtgaaccccgtattgacggccgcgac
gccaaaactgtgcgcgcgattgaagtggaagtgggtgttctgcccaaggcccacggttct
gccctgtttacccgtggtgaaacccaggcactggtggttgcaactctgggctctgcccgc
gatgcacagatcattgatgcactggaaggcgagcgcaaagatcccttcatgctgcactac
aacttccctccctactctgtaggtgagtgtggtcgcatgggtgccactggtcgtcgtgaa
attggtcacggtcgtctggcccgtcgcggtgtggctgccagcctgccgaacatggacgat
ttcccctacagcctgcgcgttgtgagtgaaattaccgagtccaacggttcttcttctatg
gcctctgtgtgtggcaccagccttgcgctgatggacgctggcgtgccaatgaaagccccc
gtggccggtattgccatgggtctggtgaaagaagacaacggttttgccgtactgaccgat
atcctgggtgacgaagaccacctgggcgatatggacttcaaagtagcgggtaccgccaac
ggtgtgactgcgctgcagatggacatcaagatcgaaggtatcaccgaagagatcatggag
attgctctcgagcaggcgctgcacgcccgtttgcatatcctggccgaaatgaacaaggtg
atttctgctcctcgtggtgagatcaacgacaacgcgccacgcttcgaaaagatcaaggtt
gatccggacaagatccgcgacatcatcggtaaaggtggtgcagtgatccgtgccatgacc
gaagaaaccggtgcgtctatcgacattgaagacgacggtaccgtcactatcttcggccag
accggcgaagtcatccgcgatgtgctggatcgtatcggtgctatcacagcagaagctgaa
gtgggcgaaatctacgaaggtacggttgtacgcatcgtggacttcggcgccttcgtcaac
ttcctgcccggcaaagacggtctggtacacatttcacaaatcgctgaagagcgtgtgaac
gatgtgaacgactatctgaaagaaggccaggtggtgcgcgtgaagtgtctggacgtagac
cagcgcggccgcatcaaactgtcgatcaaagaagccaaagcagaagaaggcggtgccgat
gcaccagccgcttctgaggaagcttcagccgagtaa
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