Streptomyces akebiae: K1J60_07630
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Entry
K1J60_07630 CDS
T08702
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sakb
Streptomyces akebiae
Pathway
sakb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sakb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K1J60_07630 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sakb03400
]
K1J60_07630 (ligD)
Enzymes [BR:
sakb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K1J60_07630 (ligD)
DNA repair and recombination proteins [BR:
sakb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K1J60_07630 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QYX76397
LinkDB
All DBs
Position
complement(1740297..1741271)
Genome browser
AA seq
324 aa
AA seq
DB search
MGDTHTMRVGRRTVEIHRPDKVLFPADADADADGDGDGDGVGKEYTKGDLVAYHRAVAPF
MLPHLRGRPLMLERHPDGLDGPMFMQKNTPEHYPEWIERVEVPKEGGTVVHPVCDDAAAL
VYLADQACLTLHRWLSRTGDVDRPDRLVLDLDPAVDDFAQVREAARDVRELLDELKLTSV
PMTTGSRGVHVVVPLNGHDDFDTVRGFAREIAEELVRAHPERLTVEPRKKDRGDRLYLDI
QRNAYAQTAVAPYTVRARPGAPVATPLTWDQLDDPAVDARRWTLADAVDQARTDPWAGAM
RRGRALGPVRRRLAARRRLTARRG
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atgggggacacgcacacgatgcgcgtcggccgccgtaccgtcgagatccaccggccggac
aaggtgctgttccccgccgacgccgacgccgacgctgatggcgatggcgatggcgatggc
gtcggcaaggagtacaccaagggcgatctcgtcgcctaccaccgtgccgtcgcccccttc
atgctgccccatctgcgcggacgcccactgatgctggaacggcatcccgacgggctcgac
gggcccatgttcatgcagaagaacacccccgagcactatccggagtggatcgaacgcgtc
gaggtgcccaaggagggcggcacggtcgtccacccggtctgtgacgacgcggccgccctc
gtgtacctcgccgaccaggcctgtctcaccctgcaccgctggctctcccggaccggcgac
gtcgaccggcccgaccggctggtcctcgacctcgatcccgccgtggacgacttcgcgcag
gtccgggaggcggcccgggacgtacgggaactgctcgacgagctgaaactgacgtccgtg
ccgatgaccaccggctcccggggcgtccatgtcgtcgtgccgctgaacgggcacgacgac
ttcgacacggtgcgcggcttcgcccgggagatcgccgaggaactcgtccgcgcccatccc
gagcggctcaccgtcgagccccggaagaaggaccggggcgaccggctctacctcgacatc
cagcgcaacgcctacgcccagaccgccgtcgccccctacaccgtgcgcgcccgccccggc
gcgcccgtggccacgcccctgacctgggaccagctcgacgatccggccgtcgacgcccgc
cgctggaccctggcggacgccgtcgaccaggcccgcaccgatccctgggccggggcgatg
cgccggggccgggcgctgggcccggtgcggcgcaggctcgcggcgcggcgcaggctcacg
gcgcggcgcggctga
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