Streptomyces albidoflavus: XNR_4488
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Entry
XNR_4488 CDS
T02545
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
salb
Streptomyces albidoflavus
Pathway
salb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
salb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XNR_4488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salb03400
]
XNR_4488
Enzymes [BR:
salb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XNR_4488
DNA repair and recombination proteins [BR:
salb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XNR_4488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AGI90811
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All DBs
Position
5105607..5106548
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AA seq
313 aa
AA seq
DB search
MSAVGAGDEERVRAGRRTLTVHRPDKVFYPADGLTKGEVVGYYRDIAPHMVPHLRDRPLM
LERDPEGVGEQPHFMQKNAGAHYPEWVRRAPMPKEDGGTVDHPVCDDAATLVYLADQAVL
TFHRWLSTVGNPRHPDLLVLDLDPPGDDFAAVREAALRLRELLAEVELDPLLMTTGSRGL
HLVVRLDGRAGHDTVRAFAQDAAELLAARHPDRLTTAVRKDRRGDRLFLDSGRNAYAQTA
VAPWSLRSRPGAPVAAPLTWEQLDDPELDARTFSLRDPDGVQAQAASRPWARPPRPRGIA
AAARRLEKLRRSG
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcggtgggcgccggggacgaggaacgcgtccgggccgggcggcgcaccctcacc
gtccaccggcccgacaaggtgttctatccggccgacggcctcaccaagggcgaggtcgtc
ggctactaccgggacatcgccccgcacatggtgccccacctgcgcgaccgcccgctgatg
ctggagcgcgaccccgaaggcgtcggtgagcagccgcacttcatgcagaagaacgccggc
gcccactacccggaatgggtacgccgggcgccgatgcccaaggaggacggcggcaccgtc
gaccacccggtctgcgacgacgccgccaccctcgtctacctcgccgaccaggccgtgctc
accttccaccgctggctctccaccgtcgggaacccccgccaccccgacctcctcgtcctc
gacctcgacccgccgggcgacgacttcgcggcggtccgcgaggccgccctgcgcttgcgg
gaactcctcgccgaggtggagctggacccgctgctgatgaccaccggctcgcgcgggctg
cacctcgtcgtccggctcgacggccgcgccggtcacgacaccgtccgcgccttcgcccag
gacgccgccgaactgctggccgcccgccaccccgaccggctcaccaccgccgtccgcaag
gaccgccggggcgaccgcctcttcctcgactccggccgcaacgcctacgcccagacggcc
gtggccccctggtcgctccgctcccgccccggcgcccccgtcgccgcgccgctcacctgg
gagcagctcgacgacccggaactcgacgcccgtaccttctcgctccgtgacccggacggc
gtacaggcgcaggccgcgtcccggccctgggcccggccgccgaggccgcgggggatcgcg
gccgccgcgcggcggctggagaagctgcgacggagtggctga
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