Salinibacterium sp. dk2585: FVA74_07970
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Entry
FVA74_07970 CDS
T06151
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sald
Salinibacterium sp. dk2585
Pathway
sald03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sald00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FVA74_07970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sald03400
]
FVA74_07970
Enzymes [BR:
sald01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FVA74_07970
DNA repair and recombination proteins [BR:
sald03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FVA74_07970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEE61517
UniProt:
A0A5B9G651
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All DBs
Position
1696535..1699015
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AA seq
826 aa
AA seq
DB search
MATRDREADQVVNIDGKRLKLTSLDKVLYPETGTTKADVLDYYSRIAEVMIPHVANRPVT
RKRWVHGVGTADAPGQVFFQKNLDNSAPKWVARRDIQHSDHVNTYPLVNDRATLAWLGQI
AALEIHVPQWQFGRTGVRKNPDRLVLDLDPGEGAGLEECAEVARLARAILKDMGLEPFPV
TSGSKGIHLYAALDGRQDSDAVSAVAHELARALEADHPGLVVSDMKKALRKGKVLVDWSQ
NNGAKTTIAPYSLRGRLRPMVAAPRTWRELAQPGLRHLDYTEVLDRVRRRGDPLASLTAG
HLASLEPTRERLDSFDATPETVERLAKYRSMRDPDKTSEPMGGSASPSSDRPSFVIQEHH
ARRLHYDFRLEHEGVLVSWAIPKGVPTDPGTNHLAVQTEDHPLEYGAFEGSIPEGEYGGG
EVTIWDSGWYELEKWRDGKEVIATLHGEKHGTHRYALIHTGGRDGREENNWLIHLMAPKG
SSSARSKKTEAPDARAKTPREAPPEPPSPMLASAGDDGDRLLLQQERDDWAFEMKWDGIR
AIAVVDDSGVRLTSRNGRDLTHSYPELEELAEASEAFAILDGEIVAINRAGRPDFGRLQD
RMNLTKASDVEKAMERTPVHFMAFDVLWSAGRSLLKEPYDERRKVLVDTVNETERVKVPP
AFDGDLDSALEASTTLGLEGVLAKRRASTYTPGRRSKSWVKLKHNRTQEVVIAGWRPGSG
SRSGRIGSLLLGLPDAEGTLRYIGRVGTGFSEKQLDELQKTLRRRERKTNPLSDVPAADA
RDAVWVTPALVGEVEFTEWTRTGRLRHPAWRGLREDKTVDDVRLES
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcgtgaccgggaagcagatcaggtcgtcaacatcgacggcaagcgcctcaag
ctgacgagcctcgacaaggtgctgtatcccgagacgggcaccaccaaggccgacgtgctc
gactactactcgcgcatcgcggaggtcatgatccctcacgtcgccaatcggcccgtgacg
cgcaagcgctgggtgcacggcgtcggaacggcggatgcgccgggccaggtcttcttccag
aagaaccttgacaactccgcacccaagtgggtcgcccgtcgcgacatccagcacagcgac
catgtgaacacctatcccctcgtcaacgatcgcgcgacgctcgcctggcttgggcagatc
gccgcgctcgagatccacgtgccgcagtggcagttcggccgcaccggcgtgcgcaagaac
cccgaccggctcgtgctcgacctcgaccccggcgagggcgccggcctcgaggagtgcgcg
gaggtcgcgcggctcgcccgagccatcctgaaggacatgggactcgagccgtttccggtg
acgagcggcagcaagggcatccatctctatgccgccctcgacgggagacaggactccgat
gcggtctcggccgtggcacacgagctcgcaagggcgctcgaggcagatcatccgggtctc
gtcgtgagcgacatgaagaaggccctgcgcaaggggaaggtgctcgtcgactggagccag
aacaacggcgcaaagacgaccatcgcgccctactccctgcggggtcggctgcgccccatg
gtcgcagcgccgcgcacgtggcgagaactcgcccagcccggcctgcgccacctcgactac
acggaggtgctcgatcgcgtgcgccgtcgcggcgacccgctcgcctcgctcacagcaggc
cacctcgcatcactcgagccgacgcgcgagcggctcgacagcttcgatgcgacaccggag
acggtcgagcggctcgcgaagtaccgcagcatgcgtgatcccgacaagacgagcgagccc
atgggcgggtccgcctccccctcatcggatcgcccctccttcgtcatccaggagcaccac
gcacggcgcctgcactacgacttccggctcgaacatgagggcgtgctcgtgagctgggcg
atccccaagggtgtgcccacggaccctggcacgaaccacctcgccgtgcagacggaagac
cacccgctcgagtacggggcgttcgaggggtcgatccccgagggcgagtacggcggtggc
gaggtgacgatctgggacagcggctggtacgaactcgagaagtggcgagacggcaaggag
gtcatcgcgacgctccacggcgagaagcacggcacgcaccgctatgccctcatccacacg
ggcggcagggacggcagggaagagaacaactggctcatccacctcatggcgcccaagggc
tcctcatcggcgcggtcgaagaagacagaggcgccggatgcccgtgccaagacaccacgc
gaggcgcccccagagcctccctcacccatgctggcctccgcaggtgacgacggcgacagg
ctgctcctgcagcaggaacgggacgactgggcgttcgagatgaagtgggacggcatccgg
gcgatcgccgtcgtcgatgactcaggggtgcgcctcacgagtcgcaacgggcgcgacctc
acgcacagctatccggagctggaggagctcgccgaggcatccgaggcatttgcaatcctg
gatggtgagatcgtcgcgatcaatcgcgcggggagacccgacttcgggcgcctgcaggat
cggatgaacctcacgaaggcgagcgacgtcgagaaggcgatggagcgcacgcccgtgcac
tttatggccttcgacgtgctgtggagcgcgggacgatcgctgctgaaggagccctacgac
gaacgccggaaggtgctcgtcgacaccgtcaatgaaacggagcgagtcaaggttccgccg
gcattcgacggcgacctcgacagcgccctcgaagccagcacgacgctcggcctggaagga
gtgctggccaagcgccgggcatcgacctacaccccgggccgccgttccaagagctgggtc
aagctcaagcacaatcgtacgcaggaggtagtcatcgcgggctggcgcccgggctctggc
tcccgtagcggccgcatcggctccctactgctcggcctgccggatgcggagggcaccctg
cgctacatcggccgcgtcggcacgggcttcagcgaaaagcaactcgacgaacttcagaag
accctgcggcgtcgcgaacgcaagacgaacccgctcagcgacgtgccagccgccgacgcg
cgcgacgccgtctgggtgacgcccgccctcgtcggggaggtggaattcaccgagtggacg
cgcaccggacgcctgcggcatcccgcgtggcggggcctcagggaggacaagaccgtggac
gacgtgcggctcgaatcctga
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