Salicibibacter halophilus: EPH95_17355
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Entry
EPH95_17355 CDS
T06083
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sale
Salicibibacter halophilus
Pathway
sale03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sale00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EPH95_17355 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sale03400
]
EPH95_17355 (ligD)
Enzymes [BR:
sale01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EPH95_17355 (ligD)
DNA repair and recombination proteins [BR:
sale03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EPH95_17355 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QDI92735
UniProt:
A0A514LMG7
LinkDB
All DBs
Position
complement(3541896..3543695)
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AA seq
599 aa
AA seq
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MSFMLAFSREQLPEGNQWLYELKYDGYRAQLIWDGSTCSLISRNHNRLEKQFPEIVATCQ
EYFPEKTTVHLDGEIVLFQNPGLADFHALKRRHRLRSQTAIHAASRKYPVCFLAFDILVA
EDHDMKNEPYLKRKQELQRLFGSFDLPKKPVTHDTRRIQSIPACEDAEAIQYKAKLYRSE
GIIAKTNLHTYIGKRSETWLKIKTPYVLSCFILSYTPANGYFEVGVFKGEEAITLGQCAH
GFSKTEKETLIAIIKNNGRWNPRAHKHEIDPSIVVRLAFTTYSNDFREARFQSFELNTPA
STCTWETWENAFLKWPERVALTHPEKPLWETPKIIKHDFLGYARAIAPYVLPHLTKRLLT
VVRYPHGRYGEAFFQKQCPDYAPSYVEIEAFEDTEHIVSNHVDTVLWLANQLAIEWHIPF
SLSSSRYVEEIVLDLDPPDAGAFPLAIEGANVLKEIFDQLGLTSFVKFSGNKGLQVYLPL
IKKRYTYEDTHPFTEAIGAYCLQYRPDLFTRERLKKHRGRKLYIDIPQHAFGKTIIAPYS
LRGNEEALVACPLFWEEVSSGLNRTAFTLRGVQQRLQDEGCPFHTFMETQNQLPDFSHH
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcatgttagcattcagccgggagcaacttcccgagggaaatcaatggctttat
gaattaaaatacgacggctatcgcgcacagctgatttgggacgggtcgacatgctccctc
atcagccgtaatcataatcggttggaaaaacaattccccgaaatcgtggccacttgccag
gagtattttcctgaaaaaacaaccgtgcatctcgacggtgaaatcgttctttttcaaaac
ccggggcttgccgattttcatgcactcaagcgccggcaccggcttcgttcacaaactgcc
attcatgccgcaagccgcaagtaccctgtatgcttcctcgctttcgacattcttgtggcc
gaggatcacgacatgaaaaatgaaccttatttaaaaagaaaacaagagcttcagcgtcta
tttggaagctttgacctgcccaaaaaaccggtcacgcatgatacacgccgtattcaatcg
atccctgcgtgtgaggatgcggaagccattcaatataaagccaagctgtaccgcagcgag
ggcatcattgcaaaaacaaacctgcacacctacatcggcaaacgctcggaaacctggtta
aaaataaaaaccccttacgtccttagctgcttcatcctttcttacacgcctgcaaatggt
tattttgaagtgggtgtttttaaaggggaagaagcaatcacccttggccaatgtgcccat
ggcttttcaaaaacggaaaaagaaacactgatcgccatcataaaaaataacggcagatgg
aatccgcgggcacacaaacacgaaatcgacccttccatcgttgtgagactcgcgtttacg
acctacagcaatgattttcgggaagcacgctttcaatcgtttgaactcaacacacctgcc
agcacgtgtacatgggaaacatgggaaaatgcctttctgaaatggccggagcgggtggcc
ctcacacatcccgaaaaacctttatgggaaacccccaagattatcaaacacgattttctc
ggctatgcccgggcgatcgccccctatgtcctcccccatctcaccaaacggttgctgacg
gtcgttcgttatccgcacggccggtatggagaagcgttttttcaaaaacaatgtcccgat
tatgccccttcctatgtggaaattgaagcctttgaagataccgagcatatcgtttccaat
catgtggataccgtgctgtggctggccaatcaactcgcgatcgaatggcacattccgttt
tcgctgtcgtcgagccgttatgttgaggagattgtccttgatcttgatcccccggatgcg
ggagcttttccgttagcgatcgaaggcgcaaatgttttaaaagaaatcttcgaccaacta
gggttaacaagctttgtaaaattttccggaaataaagggctgcaagtatatctccccctt
attaaaaaacgatacacatacgaagacacacacccgttcacagaagcgattggggcttat
tgcttgcaatatcggcctgatttattcacccgggaacgattgaaaaaacaccgcggaaga
aagctgtatatcgatattccccaacatgcatttggcaagaccattattgccccgtactcg
cttaggggaaacgaggaagcgctagttgcctgtcctctgttctgggaagaagtctcctca
ggtcttaatcggacagcgttcactctccgtggcgtccaacaacggctgcaggatgaaggc
tgcccgttccacacttttatggaaacacaaaatcagctccccgatttcagccatcattga
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