Silicimonas algicola: EF888_10190
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Entry
EF888_10190 CDS
T05779
Name
(GenBank) DUF4130 domain-containing protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
salo
Silicimonas algicola
Pathway
salo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EF888_10190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_10190
Enzymes [BR:
salo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
EF888_10190
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EF888_10190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
AZQ67468
UniProt:
A0A316G8I6
LinkDB
All DBs
Position
complement(2050072..2051496)
Genome browser
AA seq
474 aa
AA seq
DB search
MHVTLPEIGTFEAWRDEARRLLVAGVPPEDITWSRGAPDADLFAAASPLPEPTAPAPTVP
KAFVALARDAVWHSDTERFARLYGLLQAVIRDRRVLDDRGDPRVDRLEKMAKEVRRDKHK
MTAFVRFREIGDPEASRRRFAAWFEPSHFIAEPTASFFAKRFGDMDWTIFTPQLTVHFEA
GEIAFAPGVDKPPLPADATEDLWRTYFRNIFNPARLMVKAMQSEMPKKYWKNLPEAELIP
ELVSTARARAREMAEALPTLPPVRAGRITERLMAEVPETRDDYETALDGCRRCPLWQDAT
QAVPGEGPRDAALMIVGEQPGDREDLTGKPFVGPAGQLLDRVAGEAGIDRKAAFVTNAVK
HFKFTPRGKRRLHQNPNAHEIQQCKWWLDIERELVKPKLIVAMGGTALESLTGSRKGILK
RRGKIEQAEDGTPILVTVHPSYILRIPDHLREAETARFRADLERARAFLEQKAA
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtcaccctgcccgagatcggaaccttcgaggcctggcgggacgaggcgcgccgc
cttctggtcgcaggcgtcccgcccgaggacatcacatggtcgcgcggcgcacccgatgcc
gacctcttcgccgcagcctccccgctgccggaaccgacggcccctgcccccactgtcccg
aaagccttcgtcgcgctggcccgcgacgccgtctggcactccgacaccgaacgctttgcc
cggctctacgggcttctccaagccgtcatccgcgaccggcgcgtgctcgacgaccggggc
gacccccgcgtcgaccggctggagaagatggccaaggaggtgcgccgcgacaagcacaag
atgaccgccttcgtccgcttccgcgagatcggcgaccccgaggcctcgcgccgccgcttc
gccgcctggttcgagccgtcgcatttcatcgccgagccgaccgcgtccttcttcgcgaaa
cgcttcggcgacatggactggacgatcttcacccctcagttgaccgtccacttcgaggcg
ggcgagatcgccttcgctcccggcgtggacaagccgcccctgcccgccgacgcgaccgag
gacctctggcgcacctatttccggaacatcttcaatccggcgcgattgatggtgaaggcg
atgcagtccgagatgccgaagaagtactggaagaaccttcccgaggccgagctgatcccg
gaactggtctcgaccgcgcgagcgcgagctcgcgaaatggctgaggcgctgcctacattg
cccccggtccgcgcggggcgcatcacggagcgactgatggccgaagtgcccgagacccgc
gacgactacgagaccgccctcgacggctgccgccgctgcccgctctggcaggacgcgaca
caagccgtccccggcgaaggaccgcgcgatgccgccctgatgatcgtgggcgaacagccg
ggcgaccgcgaggacctgaccggcaagcccttcgtcggcccggccgggcagctcctcgac
cgcgtcgccggggaggcgggcatcgaccgcaaggccgccttcgtcaccaatgctgtcaag
cacttcaagttcacgccgcgcggcaagcgccgcctgcaccagaacccgaacgcgcatgag
atccagcaatgcaagtggtggctcgacatcgagcgcgagctggtgaagccgaagctgatc
gtcgccatgggcggcaccgcgctcgaaagcctgaccggcagccgaaagggcatcctcaag
cgccgcgggaagatcgagcaggccgaggacggcacgccgatcctcgtcaccgtccacccg
agctatatcctgcgcatccccgaccatctgcgggaggccgagaccgcacgcttccgcgct
gacctcgaacgtgcccgcgccttcctcgaacagaaggccgcctga
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