Salvelinus sp. IW2-2015 (Arctic char): 111952774
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Entry
111952774 CDS
T05762
Name
(RefSeq) laminin subunit beta-4
KO
K06245
laminin, beta 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111952774
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111952774
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
Laminin_N
LAMININ_IV_B
EzrA
Motif
Other DBs
NCBI-GeneID:
111952774
NCBI-ProteinID:
XP_023827446
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Position
LG26:40900637..40920612
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AA seq
1788 aa
AA seq
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MASLFLLVLLVPGALLQEDCDVNSCHPQLGDLMVGRAAQLSASSTCGRNGPQNYCILGYL
EDGQKCFKCDSRQPYNLYNNQNSHQIENVITTFGPERKMKWWQSENGVHQVSIRLDLETL
FQFSHLVLTFKSFRPAAMLVERSKDYGYSWKVFRYFAEDCASHFPGVSQGPAGSTDDVVC
DSRYSASEPSTDGEVVLKALDPSFDIENPYAPHIQEQITLTNLRVNFTHLFTLGDTLLGR
KKRNPQEKYYYALYEMVVRGSCFCNGHASMCMPVDGTRGDVLNEPGMIHGRCVCQHNTVG
TNCERCQDFYNDVPWRPAGQTDPHVCRRCNCHGHSETCHFDIDQYQASGGVSGGVCDGCR
HDRMGPQCERCRPYLYQDPQLSMEDPRGCIPCDCDLTGSLDNGLCDPVSGRCMCKENVAG
DRCDRCKFGFYGFSQEDPTGCQRCRCNFLGSVLTPYPCDQVTGQCVCQRLAMGPLCDQCL
PGYWGLGNTVHTCSPCDCDHGGAYSSTCSSLDGQCQCLPNMVGRSCGDPAPGHFLAALDY
YLYEAENAAPLEGKNSSSLLKPTDLPVCEEYYRQQGYDIKYQNGRLVLTRRSKRQARRRR
QGQRSIPLDPGSALQIVPRERTPDVPITWTGPGFVRVLDGAGLRFTVDNLPASLDYHLVI
RYEPESPDDWMASVSIVPLLAGDGGCPTNPKGEKTLNIPGAARVAILDTPVCLNAGSRYY
VDITFRKQPNSNPQSSSHTLIDSMGLIPKMESVQDFCSQSELDSFRRFRCFELAAEQETL
PDVCYGLIGSLSARIHNGAMLCRCNIQGSRGPYCSKFGGLCECKANVVGRCCDSCAPLNF
GFGSNGCAPCECDPRGAVAELCDQVRGQCPCRMEVGGRRCDRCLSGYYGFPLCRPCKCNG
LAELCDQDTGACLDCREHSTGYNCESCVEGYFGDPVSREPCKPCLCPDTQSSGRFFASTC
NKDPESGSLTCDCLAGHTGLRCDVCSAGFYGGLTSPGGGCDECLCNNNIDPADSDACDSV
TGECLRCLHNTQGPRCQSCKPGYYGDALAQDCKECSCDRQGTDVTQCPLGSPCFCDPLTG
QCPCRAGAVGTLCDECATGFWNIQGEYGCQPCKCDPANSFNNHCDKVTGHCQCRTEFGGR
QCDECGENHFGNPDLQCVSCDCNMEGTARPACNPLTGECLCRVGVMGIFCDECAPGYDQV
FPACFPCHPCAVLWADNVTDVHRAAQRMRTLIPDHGEQLEPGHSRQLQRMLEMHSKLDYL
GNLTERSLPRVKDVEKLCVRISKLKDSIDPNAIIVDSSSLLNTEIDNIHHEFKMLLDNLR
NKIGEAPTLDLKEMQEALGKIRKQHADFMADEKKVKEAERALENSMDTRQEIKDHLSSCS
ILGDMEGLEKKVKALSVAKLNKNICGGPGDEECSKSECGGALCRDFLGQRECGGPTCKGS
FPVSHNATKTAEQVENDLIDLLQKLKDSKIKINEAKQMTQGTQEQAEDLQKKITDSKEMF
KREKNDTKDLINRVKDYLTDEMVAPEDIENLVKAVLAIQLPGSPDDIRSMIQNIRGVLTN
FIEFKEDLKKLKDQAKTAQDLLEKAQDIRDRTKGIDVTDLKKTMTDTENTQDKVEQDLEK
AKESNGVADKMIKEIENKLNNIETNLNSTRTPEMLEEIEVLKSKTEMNREQAGQAKADAD
AAIGAATDAEKGLDKVTALFGRLKTGNTNQNNNEVANERLKNITMEAEKVAKDVQDKIQQ
IDDLEKKIQDFIRNKEDKAKEVAMLLEMVEALQKEIAARVDGYINCTS
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atggcttctctgttcctgctcgtgttgctggtgcctggggccctcctccaggaagactgt
gatgtcaactcttgccacccccagctgggggacctgatggtgggccgcgctgcccagctc
tcagcctcctccacctgtggacggaacgggccccagaactactgcatcctcggatacctg
gaggatgggcagaagtgtttcaaatgtgactccaggcagccctacaacctctacaacaac
caaaacagccaccagattgagaacgtcatcaccacctttggccctgagcgcaagatgaag
tggtggcagtctgagaacggggttcatcaagtcagtatccggctggatctggagactcta
ttccagttcagccatctcgtcctcactttcaagagtttccgtcctgccgccatgctggtg
gagaggtccaaagactacgggtacagttggaaggtgttccgctactttgccgaggactgt
gcctcccacttccctggggtctcacaagggccggctggcagcaccgatgacgtcgtctgt
gacagcagatactccgcctcagagccatctactgacggagaggtggtgttgaaggctcta
gatccaagctttgacatagagaacccatatgctcctcatattcaagagcagatcaccttg
accaacctgcgggtcaacttcacccatctgttcaccctgggtgacaccctactggggcgg
aagaagaggaaccctcaggagaagtactactatgccctgtacgaaatggtggtgcgcggc
agctgcttctgcaatggccatgccagcatgtgcatgccggtggatggcacccggggtgac
gttttaaatgagcctggcatgattcacgggcgctgtgtatgccaacataacactgtgggc
acaaactgtgagagatgccaggacttttacaacgatgtcccctggaggccggccggccaa
actgacccacatgtctgcagaaggtgtaactgtcacggtcattcggagacgtgtcacttc
gacatagaccagtaccaggccagtgggggggtcagcgggggtgtgtgtgacggctgccga
cacgaccgcatgggtccccagtgtgaacgctgccgaccctatctctatcaggacccccag
ctctccatggaagaccctcggggctgtatcccgtgtgactgtgacctgacggggtccctg
gataatggcctgtgtgaccccgtgtcgggccgctgcatgtgtaaggagaacgtggcgggg
gacaggtgtgatcgctgtaaatttggcttctacgggttcagccaggaggaccccactggc
tgccagaggtgcaggtgtaacttcctgggtagtgtcctgaccccctacccatgtgaccag
gtgacaggccagtgtgtatgtcaacgcctcgccatgggacccctgtgtgaccaatgtctg
ccaggctactggggtctggggaacactgtacacacctgctcaccttgtgactgtgaccat
ggaggagcctacagcagcacgtgctcttcattggacggccagtgtcagtgcctgccaaac
atggtgggtcggagctgtggggatcctgcccctggacatttcctggctgctctagactac
tacctgtacgaggcagagaacgctgccccactggaaggaaaaaactcctcctctctgttg
aaacccacagacctgcctgtgtgtgaggaatactacagacagcagggctatgacatcaaa
tatcaaaatggccgcttggtcctgaccaggagaagcaaaagacaagccaggaggagaaga
cagggacagaggtccattcccctggacccgggctcagcactccagattgtgccccgggag
aggacaccagatgtaccaatcacttggaccggtccaggattcgtgcgggtcctggatggt
gctgggcttaggttcactgtggacaacctcccagcgtccctcgactaccatctagtcatc
cgctatgaaccagagtcgccagatgactggatggcctcrgtgagcattgttccattattg
gctggtgacggaggttgtcccactaacccgaaaggggagaaaaccctcaacatacctggg
gctgccagggttgccattttggatacgcctgtgtgtctgaacgcgggaagtagatattat
gtggacatcacttttaggaagcagcccaactctaaccctcagtccagctcacataccctc
atcgactcaatgggtctgatccctaagatggagtctgtgcaggacttctgttcgcagagt
gagctggactcgttcagaagattccgctgttttgagttggctgctgagcaggagaccctg
cctgatgtgtgttatggcctcattggaagcttgtcggctcgcatacacaacggggccatg
ctttgcaggtgtaacatccagggttctcgtggcccctactgcagtaaattcggagggctc
tgtgagtgcaaggccaacgtggttggccgctgctgtgactcctgcgcccccctgaacttc
ggcttcggatccaacggctgtgcaccctgtgagtgtgaccctcgcggtgcagtggcggag
ctgtgtgaccaggtcagaggtcagtgtccgtgtcgtatggaggtgggcgggcgacgctgt
gatcgttgcctgtcagggtactacggcttcccactgtgtcggccctgtaagtgcaacggc
ctggctgaactgtgtgaccaggacactggagcctgtctggactgcagggaacactccacc
ggwtacaactgtgagagctgtgtggagggttactttggtgacccagtctccagggagccc
tgtaagccttgtctgtgccctgacactcagtccagtggacggttctttgccagcacctgc
aacaaggacccagagtctggtagcctgacttgtgactgcctggctggacacacaggtctc
cgctgcgatgtctgctccgctggtttctacggcggcctgacctcgccgggcggcggctgc
gacgagtgtctctgtaacaacaacatcgaccctgctgacagtgacgcgtgtgacagtgtg
acgggcgagtgtttgcgatgcctccacaacacccagggaccccgctgtcagagctgtaag
cctggctactatggagacgcactggcccaggactgcaaagagtgctcctgtgaccggcag
gggacggatgtgacccagtgccctctgggcagcccgtgtttctgtgacccgctgacgggt
cagtgcccgtgtcgggcgggcgcggtgggaacgctgtgtgacgagtgtgccaccggcttc
tggaacattcagggagagtacgggtgccaaccgtgcaaatgtgaccctgctaactccttc
aataaccactgtgacaaggtgactggtcattgccagtgtcgtactgagtttggaggaaga
cagtgtgatgagtgtggggaaaatcactttgggaaccctgacctgcagtgtgtttcctgc
gattgtaacatggagggtaccgcccgccccgcctgcaacccattgacgggtgagtgtcts
tgccgcgttggtgtgatgggtatcttctgtgatgagtgtgcccctgggtatgaccaagtc
ttccccgcctgcttcccgtgccacccctgtgctgtcctgtgggcggacaacgtcaccgac
gtccaccgtgccgcccagaggatgcgcaccctcatccctgaccacggcgaacagctggag
cctggacacagtcgtcagttgcaacgaatgctggagatgcactccaagctggactatctg
gggaacctgacagagagatctctacctcgggtgaaagacgtggagaagctgtgtgtcaga
atctcgaaactcaaagactccatagaccccaacgccatcatcgtggactcatcatctctt
ctgaacactgagatcgacaacatccaccacgagttcaagatgctgttggataacttaagg
aacaaaatcggcgaggctccaacactagatctaaaggaaatgcaggaggccctgggtaag
atccggaagcagcatgcagacttcatggctgatgagaagaaggtgaaggaggccgagagg
gccctggagaactccatggacacacggcaggaaatcaaagaccatctgtccagctgcagc
atcttgggagacatggaggggctggagaagaaggtcaaggctctgagtgtggccaaactc
aacaaaaacatctgtggaggcccaggtgacgaggaatgctccaaatcagagtgtgggggt
gcgctgtgtcgagacttcctgggacagagagaatgtgggggtcctacgtgcaagggcagc
ttccctgtgagccacaacgccacaaaaacagctgagcaagtagaaaatgaccttatcgac
ctgctccaaaaactaaaggactccaagatcaagatcaatgaggccaaacagatgacccaa
ggcacccaggagcaggcagaggatctacagaagaagatcactgacagcaaggagatgttt
aagagggagaagaatgacaccaaggacctcatcaatagggtcaaagactacctcacagat
gagatggtggcaccagaggacatagagaatttggtcaaggcwgttctggccatccagctg
ccgggctctccggacgacatccgctccatgatccaaaacatccggggcgtgctgaccaac
ttcattgagttcaaggaggatctgaaaaaactaaaagaccaagccaagacagcccaggac
ctgctggagaaagctcaggatatcagggacagaaccaagggtattgatgttacggatctc
aagaaaaccatgacggacactgagaatacacaggacaaggtcgagcaagacctggagaag
gctaaggaaagcaatggcgtggcggacaagatgattaaagagattgagaayaaactgaac
aacatagagactaacttgaactctactagaactccagagatgctggaggagattgaggtt
ctgaagagcaagacagagatgaacagagagcaggcggggcaggccaaagctgatgcagat
gcagccataggtgccgctactgacgcagagaaggggcttgacaaggtgactgcgctgttt
ggtaggctaaagacgggaaacacaaaccagaacaataatgaagtggccaacgaacgcctg
aagaacattactatggaggcagagaaagtcgcaaaagatgtccaagataaaattcaacaa
attgacgacttggagaaaaagatccaagacttcatcagaaacaaagaggacaaggccaag
gaggttgccatgttgctggagatggtagaagccctccaaaaggagattgctgcgcgtgtg
gatggttacattaactgtacctcctaa
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