Salvelinus sp. IW2-2015 (Arctic char): 111967624
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Entry
111967624 CDS
T05762
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111967624
03015 mRNA surveillance pathway
111967624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111967624
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111967624
mRNA cycle factors
P-body specific factors
111967624
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
111967624
NCBI-ProteinID:
XP_023848564
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All DBs
Position
LG8:23542406..23545899
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AA seq
438 aa
AA seq
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MKDGKENTRQREKXMEIKCENIEKTEKPKQEKKEVMTKIIIRRLPPSITKEELEEQLQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKIPEDIVLFRDRFDGYVFVDNGGQEYPAIVEFA
PFQKIAKRRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPETLLEEIEAKTKELVA
KKMTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEPEKFKKGD
KPSENDKDQAKEVPKIKLLRKPDRGDDVEKLKKPEKDKMKDDRAPGCPDMTKRRNFETRE
DRVSRKASDVERDRNRERDKERERRQKEKERIRRLDEDRRRRRERHDGENSYRKREEEEK
REKRDRVWEKRRSENAGDSASHTDKPKKSEETLREEKAKRDCLRNKDRPAIQLYQPGARN
RGGETHXEARDQEKGVEG
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacggcaaggaaaatactcgtcagagggagaaaakgatggagataaaatgcgaa
aacattgaaaaaacggagaagccaaagcaggagaaraaagaagtaatgacgaagatcatt
atccgacgtctgcctccaagcataaccaaggaggaactggaggagcaattgcagccactt
ccagaagtggattacttagaatttttctccaatgacagcagcatgtacccccatgtcttc
gccagagcatacatcaacttcaagattccggaagatattgtacttttcagagaccggttt
gatggatatgtgttcgttgataatggagggcaggagtatccagccattgttgaatttgct
ccttttcaaaagattgccaaaagaaggagtaagaaaaaggatgctaaaagtggaacaata
gatgaagatgctgactacaagaaattcctggagatttataatggcgacgatgaaaagttt
acatccacccctgagactctactggaggaaatagaggctaaaacaaaggaactagtagct
aagaaaatgactccccttttggacttcttaaagaacaaacagagaatccgtgaggaaaag
aaagaggaaaggaggagacgagaactcgaacgtaagcgcctgagggacgaggaacgtcgg
aagtggagggaggaggacaggagaaagcgcaaagaaccagagaagttcaagaaaggagac
aaaccttccgagaatgataaagaccaagcgaaggaggtgccaaaaatcaagctcttgaga
aaaccagacagaggagatgatgtggagaagttaaagaaacctgagaaggacaagatgaaa
gacgacagagctccagggtgtcctgatatgacgaaacgccgaaacttcgaaaccagggag
gacagggtatcacggaaagcttcagacgtagaaagggacagaaaccgcgaacgagacaag
gagagggagcggcggcagaaagagaaggagcgcatcagacgactagacgaggatcgacga
aggaggagggaaaggcacgatggagagaactcctacagaaagcgagaggaagaagagaaa
agggagaaaagggatcgtgtctgggaaaagagaaggagcgagaatgccggggattctgca
agccatactgataagcctaaaaagtcagaagaaaccctgagggaggagaaagctaaaaga
gattgtttaagaaacaaggatcggcctgccattcagctataccagccaggtgccaggaac
cgaggaggagaaactcatgytgaggcgcgagaccaagagaagggagttgaaggataa
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