Salvelinus sp. IW2-2015 (Arctic char): 111979185
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Entry
111979185 CDS
T05762
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111979185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111979185
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111979185
Complex C
U4/U6.U5 tri-SnRNP related factors
111979185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
111979185
NCBI-ProteinID:
XP_023865312
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Position
LG19:complement(3297209..3313351)
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AA seq
509 aa
AA seq
DB search
MANNTVVGNQQQPQAVTKIGPNAGKHGNNLPLWGNEKTMNLNPMVLTNVLSSPYFKVQLY
ELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFT
IKMTRKQVMGLITHNDSPYIRALGFMYIRYTQPPADLVDWYDVFLDDEEELDVKAGGGCV
MTIGEMVRSFLTKLEWFSTLFPRIPVPVQKMIDTQMKARPRKVPEKVEEPEEPPTEGRAT
EGRRRSRSPRRTPSPRRTPKRSRSRSHHRERERHGPSFDRELERERDRQRKERDSGDGKG
EERERRRSRSADRTQERRERRGSRERKGELKDREKDAQGGVENDRRKDREYHKDGGSERE
RSKDKRSKGETEDRRHKEERDERRGHREERKAKRSSRSASRERRQKKSIKRQVKEERRGK
AEVGEDKEKSIKQQVKEKSIKQKVKESRGKAEVGEDKEKSRKKQCSREGEQRSHKHSRSK
ERRHRPHEPSNGKDHGKHGERKTSQSTER
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaacactgtcgtcgggaaccagcaacaaccacaggccgtgaccaagattggc
cctaacgctggaaaacatggtaacaacttgcctctctggggcaacgaaaagactatgaac
ttgaatcctatggttctcaccaacgtgctctcatctccatatttcaaagttcagctttac
gaattgaaaacctaccatgaggtggtggatgagatctatttcaaggttactcatgttgag
ccctgggagaaaggcagtaggaagactgccggacagactggaatgtgcggaggggtgcgg
ggagtcgggactggcggcattgtgtccacagccttctgcctgctgtataaactgtttacc
atcaagatgacccgtaaacaggtgatgggactgatcactcacaacgactcaccctacatc
agagcacttggctttatgtacataagatacacccagccccctgcagacctggtggactgg
tatgatgttttcctggatgatgaggaggagctggatgtgaaggctggaggtggctgcgtt
atgacaatcggagagatggtccggtcgttcctcaccaagctggagtggttctccacactc
ttcccacgcatcccggtgcctgtgcagaagatgattgacacacagatgaaggcaaggccc
cggaaggttcccgagaaggtagaggagccggaggaaccaccaacagaggggcgggcaaca
gagggccgtagacgctccaggagccccaggcgtaccccgagccccaggaggactcccaaa
cggtcgaggagccggagccaccaccgcgaacgagagcgccacggccccagcttcgaccgc
gagctggagagggaacgcgaccgccagaggaaagagcgggattctggggatgggaaagga
gaagagcgggagaggcgtcggtcccggagcgcagaccgtacccaggaacgccgggaacgt
cgcgggagccgggaacgcaagggagagctaaaagacagggagaaagatgcgcaggggggt
gtggagaatgacaggaggaaggacagggagtaccataaagatgggggcagcgagagggag
aggtccaaggacaagaggagcaagggagagactgaggacaggagacacaaagaagagcgt
gatgagaggagggggcacagggaggagaggaaggccaagcgctccagtcggagtgcaagc
agggaaaggagacaaaagaagtccataaagcggcaagtcaaagaggagcgcagaggcaag
gctgaggtaggggaggacaaggagaagtccataaagcagcaagtcaaggagaagtccata
aagcagaaagtcaaagagagcagaggcaaggctgaggtaggggaggacaaggagaagagt
aggaagaagcagtgcagccgggagggggagcagcgctcgcacaaacacagccgcagtaaa
gagcggcgccatcggccacatgagcccagcaacgggaaagaccacgggaaacacggagag
cgcaaaacgagccagagcacagagcgatga
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