Salegentibacter sp. T436: AO058_13880
Help
Entry
AO058_13880 CDS
T04614
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
salt
Salegentibacter sp. T436
Pathway
salt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AO058_13880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salt03019
]
AO058_13880
03009 Ribosome biogenesis [BR:
salt03009
]
AO058_13880
Enzymes [BR:
salt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AO058_13880
Messenger RNA biogenesis [BR:
salt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AO058_13880
Ribosome biogenesis [BR:
salt03009
]
Prokaryotic type
rRNA helicases
AO058_13880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APS39897
UniProt:
A0A1L6R5U5
LinkDB
All DBs
Position
3152767..3154566
Genome browser
AA seq
599 aa
AA seq
DB search
MNKFEQLGLNPSILKAVEEMGFTSPSEIQEKAIPVLLNEDTDMVALAQTGTGKTAAFGFP
LIQKINVSKKHTQALILSPTRELCLQITNELKNYSKFEKGLNPVAIYGGASITDQARQIE
RGAQIIVATPGRMQDMINRNLVDISKIEYCVLDEADEMLNMGFFEDIKAILSHTPKEKHT
WLFSATMPKEVATIAKKFMRTPIEITVGSKNQGTSNVSHEFYLVNSRQRYEALKRLADAN
PDIFSVIFCRTKRDTQKVAEKLIEDGYSAAALHGDLSQNQRDLVMKSFRNKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVTKSEMRKIKSIERI
IQQKFEQKDIPDGMEICRVQLFHLANDIKETKINHDIDAYLPGINEVLEDFTKEELIKKF
FSVEFTRFFNYYKNSEGLSSPSAPADGGGSGDSTRYFINVGAKDDFDWMSLKDFLKATLD
LGRDDVYKVDVKDSFSFFNTDAKNTETVLSTFKDFKHQGRYINVEETTDTGGRGKRGGGG
GGGGGRKGGKFNKGGGKPDFKGGGRRRSDDFKGGSGKGKKSGNRSKNIESSIKRRRSKN
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatttgaacaattaggtttaaacccttctattcttaaagcagtcgaagaaatg
ggttttacaagcccaagtgagatacaggaaaaagcgattcctgttttactaaacgaagat
accgatatggtggcattggcccaaaccggtacaggaaagacagctgcttttggattcccg
cttatccagaaaataaacgtaagtaaaaaacatacccaggcattaattctttcaccaaca
cgtgaactttgcctgcaaattaccaacgaattaaagaattactcgaagtttgaaaaaggt
cttaatccggttgctatttatggtggggccagcattacagaccaggccagacaaattgaa
cgtggagctcaaattattgtggctaccccgggacgtatgcaagatatgataaatcgtaat
cttgtagatatttctaaaatagaatactgtgttttagatgaagcagatgaaatgctaaat
atgggcttctttgaagacattaaagcaattctttctcatactccaaaagaaaagcatacc
tggttattctctgcaactatgcctaaagaagttgcaacaattgccaagaaatttatgcgt
acgcctattgaaattactgtaggttctaagaaccagggaacatctaatgtttcccacgag
ttttacctggtaaattcaagacaacgttacgaagctttaaaaagactggcagatgccaat
ccagatattttttcggttattttttgccgaacaaaaagagatactcaaaaagtagctgaa
aaacttattgaagacggatacagcgctgcagctttgcacggtgaccttagtcagaaccaa
agagatttggtgatgaaaagttttagaaataagcaaatccagatgttggttgcaacagat
gttgctgcccgcggaattgatgtagatgatattactcacgtaatcaactaccaacttcct
gatgagattgaaacgtacactcaccgtagtggtcgtaccggtcgtgctggcaagagcgga
gtttctatggttattgttaccaaaagtgaaatgcgtaaaattaaaagtattgagcgtatt
attcagcagaaatttgagcaaaaagatattcctgacggaatggaaatttgccgcgtgcag
ctgtttcaccttgcaaacgatattaaagaaaccaagattaatcacgatatagatgcgtat
ctaccgggaattaatgaggttttagaagattttaccaaagaagaacttattaagaaattc
ttttctgtagaatttactcgtttcttcaattattataaaaattctgaaggtttaagttct
ccctcagctcctgcagatggtggtggttctggagattctacacgttactttataaatgta
ggtgcaaaagatgattttgactggatgagcttaaaggatttccttaaggctactttagat
cttggtcgtgacgatgtttataaagttgatgtaaaagacagcttctctttctttaatacc
gatgcaaaaaataccgaaactgttttaagcacctttaaagactttaaacaccagggtaga
tatattaatgttgaagaaactactgataccggcggacgtggtaaacgcggcggcggtggc
ggtggcggtggcggccgaaaaggcggaaaattcaacaaaggcggcggcaaaccagacttt
aaaggaggtgggcgtagacgttcagacgattttaaaggtggttctggaaaaggaaagaaa
tctggaaaccgaagcaaaaacatagaaagctctattaaaagaagacggagcaaaaattaa
DBGET
integrated database retrieval system
