Streptomyces alboniger: CP975_30240
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Entry
CP975_30240 CDS
T06908
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
salw
Streptomyces alboniger
Pathway
salw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
salw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP975_30240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salw03400
]
CP975_30240
Enzymes [BR:
salw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP975_30240
DNA repair and recombination proteins [BR:
salw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP975_30240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
baeRF_family6
Motif
Other DBs
NCBI-ProteinID:
QEV21251
UniProt:
A0A5J6HSC4
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All DBs
Position
6879984..6880988
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AA seq
334 aa
AA seq
DB search
MSDVRTVRAGRRTVELHRPDKVLFPAGEDGGGRERSGGEDSSEGRTQGEGRTQGEGAGKG
YTKADLFDYYRSVAPYMLPHLRGRPLMLERHPDGVEGPRFMQKDTPDHYPEWITRAEVAK
KDGTVTHTVCDDIATLLFLADQACLTLHRWLSRTGQIDRPDRLVFDLDPAKDDFGAVRDA
ARLLGELLDHMSLPSALMTTGSRGLHVVVPLNGRHDFDDARDFAKDVADTLAAAHPERLT
TAARKEARGDRLYLDVQRNGYAQTAVAPFSVRAEPGAPVAVPLAWEQLDDPAVHARRWTI
ENALEQARTDPWAGVPRNGRALGPARRKLRALRG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgtacggacggtgcgggcgggccgccgcaccgtggagctgcaccggccggac
aaggtcctcttcccggccggtgaggacggcggcggcagggaaagaagcggcggcgaggac
agcagcgagggccgtacgcaaggcgagggccgtacgcaaggcgagggcgcggggaagggc
tacacgaaagcggacctcttcgactactaccggtccgtcgccccctacatgctgccccac
ctgcgcggccgccccctgatgctggagcgccaccccgacggtgtcgagggcccccgcttc
atgcagaaggacacgccggaccactacccggagtggatcacccgcgccgaggtcgccaag
aaggacggcacggtcacgcacaccgtgtgcgacgacattgccacgctgctcttcctcgcc
gaccaggcctgtctcaccctgcaccgctggctctcccgcaccggccagatcgaccgcccc
gaccggctggtcttcgacctggacccggcgaaggacgacttcggcgccgtgcgcgacgcg
gcccggctgctcggggagcttctcgaccacatgagcctgccgtccgccctgatgacgacc
ggctcacgcggactgcacgtcgtcgtgcccctcaacggccgccacgacttcgacgacgca
cgcgacttcgccaaggacgtcgccgacacgctcgccgccgcgcaccccgagcggctcacc
acggccgcccgcaaagaggcgcgcggcgaccggctctacctcgacgtgcagcgcaacggg
tacgcgcagacagcggtggcccccttctccgtgcgggccgagcccggcgccccggtggcc
gtcccgctcgcctgggaacagctcgacgaccccgccgtacacgcccgccgctggaccatc
gagaacgccctggaacaggcccgcacggacccgtgggccggcgtcccgcgcaacggacgc
gccctcggaccggcccgccgcaagctgcgcgccctgcgtggttga
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