KEGG   Streptomyces ambofaciens: SAM23877_0862Help
Entry
SAM23877_0862     CDS       T04055                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
samb  Streptomyces ambofaciens
Pathway
samb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:samb00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    SAM23877_0862
Enzymes [BR:samb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SAM23877_0862
DNA repair and recombination proteins [BR:samb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SAM23877_0862
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase
Motif
Other DBs
NCBI-ProteinID: AKZ53911
UniProt: A3KJ80
LinkDB All DBs
Position
844047..845027
Genome map
AA seq 326 aa AA seqDB search
MELPLIPPMLATPGPLPPAAQDTRWAYETKQDGQRVVVYLPGDGSVLLRARSGQDITAAY
PELAPLGTALGDAPAVLDGEVLALDDEGRADFQLLQSRMGLAHAPGRVAQRAAKVPVHLV
LFDALHLGRHSLLGLPYTARRERLTALGLVGPSWSTPGALVGHGAQALRATREHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMRSEDVVVGGWLPGKGRLTGLPGAVLVGQRAAGRLRYV
GGVGTGWSAAERTELAALLRAAETDVCPFDPVPPVRGARWAVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEESAADLPDDMV
NT seq 981 nt NT seq  +upstreamnt  +downstreamnt
gtggagctgccgctgatccctcccatgctcgccacgcccggccccctgccacccgccgcg
caggacacgcgctgggcgtacgagaccaagcaggacggccagcgggtggtggtctacctg
cccggcgacggcagtgtgctgctgcgcgcccgctccggccaggacatcacggccgcctac
cccgagctggcaccgctcggcaccgcgctcggcgacgcccccgcggtcctggacggggag
gtactggccctggacgacgagggccgcgccgacttccagttgctgcagtcccggatgggc
ctggcgcacgccccgggccgggtggcgcagcgggcggcgaaggtccccgtccatctggtg
ctcttcgacgccctgcacctgggacgccactccctgctggggctgccgtacaccgcccgc
cgcgaacggctgacggccctcggcctcgtcggcccctcctggtcgacgccgggagccctg
gtcggccacggcgcacaggcgctgcgtgccacccgcgagcacgggctggagggcctggtg
tgcaaacggctggactcggtgtacgagcccggcgtccgctcccgggcctggatcaagatc
cgcaacatgcgcagcgaggacgtggtggtcggcggctggctgcccggcaaggggcggctc
acgggcctgcccggcgccgtcctggtcggccagcgcgccgcgggccggctgcgctacgtc
ggcggggtcggcaccggctggagcgcggccgagcgcacggagctggccgcactgctgcgg
gcggccgagaccgacgtgtgtcccttcgaccccgtaccgccggtgcggggagcgcgctgg
gcggtcccccggctggtcggcgaggtccgctacagcacccgcacccgggaggggatgctg
cgccagccgtcgtggctgaggctccgtccggacctcgcgcccgaggagtcggccgccgac
ctgccggacgacatggtgtga

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