Streptomyces ambofaciens: SAM23877_0862
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Entry
SAM23877_0862 CDS
T04055
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
samb
Streptomyces ambofaciens
Pathway
samb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
samb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SAM23877_0862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
samb03400
]
SAM23877_0862
Enzymes [BR:
samb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SAM23877_0862
DNA repair and recombination proteins [BR:
samb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SAM23877_0862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AKZ53911
UniProt:
A3KJ80
LinkDB
All DBs
Position
844047..845027
Genome browser
AA seq
326 aa
AA seq
DB search
MELPLIPPMLATPGPLPPAAQDTRWAYETKQDGQRVVVYLPGDGSVLLRARSGQDITAAY
PELAPLGTALGDAPAVLDGEVLALDDEGRADFQLLQSRMGLAHAPGRVAQRAAKVPVHLV
LFDALHLGRHSLLGLPYTARRERLTALGLVGPSWSTPGALVGHGAQALRATREHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMRSEDVVVGGWLPGKGRLTGLPGAVLVGQRAAGRLRYV
GGVGTGWSAAERTELAALLRAAETDVCPFDPVPPVRGARWAVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEESAADLPDDMV
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
gtggagctgccgctgatccctcccatgctcgccacgcccggccccctgccacccgccgcg
caggacacgcgctgggcgtacgagaccaagcaggacggccagcgggtggtggtctacctg
cccggcgacggcagtgtgctgctgcgcgcccgctccggccaggacatcacggccgcctac
cccgagctggcaccgctcggcaccgcgctcggcgacgcccccgcggtcctggacggggag
gtactggccctggacgacgagggccgcgccgacttccagttgctgcagtcccggatgggc
ctggcgcacgccccgggccgggtggcgcagcgggcggcgaaggtccccgtccatctggtg
ctcttcgacgccctgcacctgggacgccactccctgctggggctgccgtacaccgcccgc
cgcgaacggctgacggccctcggcctcgtcggcccctcctggtcgacgccgggagccctg
gtcggccacggcgcacaggcgctgcgtgccacccgcgagcacgggctggagggcctggtg
tgcaaacggctggactcggtgtacgagcccggcgtccgctcccgggcctggatcaagatc
cgcaacatgcgcagcgaggacgtggtggtcggcggctggctgcccggcaaggggcggctc
acgggcctgcccggcgccgtcctggtcggccagcgcgccgcgggccggctgcgctacgtc
ggcggggtcggcaccggctggagcgcggccgagcgcacggagctggccgcactgctgcgg
gcggccgagaccgacgtgtgtcccttcgaccccgtaccgccggtgcggggagcgcgctgg
gcggtcccccggctggtcggcgaggtccgctacagcacccgcacccgggaggggatgctg
cgccagccgtcgtggctgaggctccgtccggacctcgcgcccgaggagtcggccgccgac
ctgccggacgacatggtgtga
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