KEGG   Streptomyces ambofaciens: SAM23877_1283Help
Entry
SAM23877_1283     CDS       T04055                                 

Gene name
lig
Definition
(GenBank) putative DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
samb  Streptomyces ambofaciens
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:samb00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    SAM23877_1283 (lig)
   03410 Base excision repair
    SAM23877_1283 (lig)
   03420 Nucleotide excision repair
    SAM23877_1283 (lig)
   03430 Mismatch repair
    SAM23877_1283 (lig)
Enzymes [BR:samb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SAM23877_1283 (lig)
    6.5.1.6  DNA ligase (ATP or NAD+)
     SAM23877_1283 (lig)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SAM23877_1283 (lig)
DNA replication proteins [BR:samb03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SAM23877_1283 (lig)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SAM23877_1283 (lig)
DNA repair and recombination proteins [BR:samb03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SAM23877_1283 (lig)
   NER (nucleotide excision repair)
    Other NER factors
     SAM23877_1283 (lig)
   MMR (mismatch exicision repair)
    Other MMR factors
     SAM23877_1283 (lig)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1312985..1314556
Genome map
AA seq 523 aa AA seqDB search
MTPCFPVHHDCMLLARLAQVSREVAATSARSRKTALLAELFREAEAADVPVVIPYLAGRL
PQGRIGVGWKVLSRPVTPAAGPTLTVREVDDRLTRLAAVSGAGSQAERARQVDELMGTAT
EDEQRFLIGLLTGEVRQGALDAAAVEGLAAATGAPAADVRRAVMLAGSLQTVAEALLADG
PGALDGFRLTVGRPVLPMLAHSASSVAEAIGKLGAAAVEEKLDGIRVQVHRDGATVRVYT
RTLDDITDRLPEVTATALALPGERFVLDGEVISLDEDGHPRSFQETAGRVGSRTDVATAA
RAVPVSVVFFDALSVDGRDLLDLPLTERHAELARLVPEPTRVRRTLVPGPEETPAAQEFL
AQALERGHEGVVVKGLDAGYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGRLSNLH
LGARTADGSFAMLGKTFKGMTDALLAWQTERLGELAVEQHDWGVTVRPELVVEIAYDGLQ
RSTRYPAGVTLRFARVVRYREDKRPEEADTVETLLAAHPGAAP
NT seq 1572 nt NT seq  +upstreamnt  +downstreamnt
gtgaccccgtgcttcccggtgcaccatgactgcatgctgctcgcccggttggcccaggtg
tcccgggaggtcgccgccacctcggcgcggtcccggaagaccgccctgctcgcggagctg
ttccgggaggcggaggcggcggacgtgccggtggtcatcccgtatctggcgggacggctc
ccccagggccggatcggcgtcggctggaaggtgctgagccgcccggtcacgccggccgcc
gggccgaccctgaccgtgcgcgaggtggacgaccggctgacccgcctcgcggcggtgtcc
ggcgccggttcgcaggccgagcgggcacgtcaggtggacgagctgatgggcacggccacc
gaggacgagcagcgcttcctgatcgggctgctcaccggcgaggtccggcagggcgccctg
gacgcggcagccgtggagggcctggcggcggcgaccggcgcgcccgcggcggacgtgcgg
cgcgcggtgatgctcgcgggctcccttcagacggtggccgaggccctgctcgccgacggc
cccggcgccctggacggcttccggctcaccgtcggacggccggtcctgccgatgctcgcc
cacagcgcctcctcggtcgccgaggcgatcggcaagctcggtgccgcggccgtcgaggag
aagctggacggcatccgcgtccaggtgcaccgcgacggcgccaccgtacgcgtctacacc
cgcaccctggacgacatcaccgaccggctccccgaggtcaccgcgacggccctcgccctg
cccggggagcggttcgtcctggacggggaggtgatctccctcgacgaggacggacacccc
cgctccttccaggagaccgccggacgcgtcggctcccgcacggacgtcgccacggccgca
cgggcggtgcccgtctccgtcgtgttcttcgacgcgctgtccgtcgacggccgtgacctg
ctcgacctgccgctcaccgagcgccacgcggagctggcccggctggttcccgagccgacg
cgggtacggcgcacgctggtgcccggccccgaggagacaccggcggcgcaggagttcctc
gcccaggcgctggagcgcggccacgagggcgtcgtggtgaagggcctcgacgccggttac
agcgcgggccggcgcggcgcgtcctggctcaaggtcaaacccgtgcacaccctcgacctg
gtcgtcctggccgccgagtggggacacggccgccgcaccggcaggctctccaacctccac
ctgggcgcccgcaccgcggacggctccttcgcgatgctcggcaagaccttcaagggcatg
accgacgccctgctggcctggcagaccgaacgtctgggagaactggccgtcgagcagcac
gactggggagtgaccgtacgccccgaactggtcgtcgagatcgcctacgacggtctccag
cgctccacgcgctacccggccggcgtcaccctccgcttcgcccgcgtcgtccgctaccgc
gaggacaagcgccccgaggaggcggacacggtggagacgctgctcgccgcgcaccccggg
gcggccccgtga

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