Sinorhizobium americanum: SAMCFNEI73_Ch3157
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Entry
SAMCFNEI73_Ch3157 CDS
T04621
Name
(GenBank) ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
same
Sinorhizobium americanum
Pathway
same03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
same00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SAMCFNEI73_Ch3157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
same03400
]
SAMCFNEI73_Ch3157
Enzymes [BR:
same01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SAMCFNEI73_Ch3157
DNA repair and recombination proteins [BR:
same03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SAMCFNEI73_Ch3157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APG92421
UniProt:
A0A1L3LQQ6
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All DBs
Position
3154502..3155488
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AA seq
328 aa
AA seq
DB search
MKLEAVRPTDAAPKTGKGKPAATKSKASSSNGDADVLGVRISHPERILFEGQGITKIDLA
RYYAVIAERMLPFAADHPLSLVRCPQGGERHCFYQKHASDGFPETIREVPIEESSGDTEN
YMYVHDAKGLVAAVQMGTLEFHIWGATIGRLETPDRLVFDLDPDPSVDFATVKAAAATLR
DELAGIGLQTVAMVTGGKGVHVIVPLRPQAEWEEAKAFAKRVAQSFAERDPEHFVATMSK
AKRKGRIFIDWLRNDRGATAIAPYSTRARAGGPVATPVGWDELERLDAANGFHIADILER
IETGTDPWPEIAKTKQSLTKKVLESAVG
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgaaactggaagcagtgagaccgacagacgccgcgccgaaaacggggaagggcaaaccc
gctgccacgaaaagcaaggcgtcgtccagcaatggcgacgccgacgtcctcggcgtccgg
atctcgcaccccgagcgcatcctcttcgaaggccagggcatcaccaagatcgaccttgcc
cgctactatgccgtgatcgcggagcggatgctgcccttcgcagccgatcatcccctttcg
ctggtgcgctgcccgcagggcggtgagcggcactgcttctaccagaagcacgccagcgac
ggtttcccggagacgatccgcgaggtgccgatcgaagaatcgtccggcgacaccgagaac
tacatgtatgtccacgacgccaagggccttgtcgcggccgtgcagatgggcacgctcgag
tttcacatctggggggcgacgatcggccgcctggaaacacccgatcgcctggtcttcgac
ctcgaccccgatccgagcgtcgacttcgccacggtaaaggcggccgccgccacgctgcgc
gacgaacttgccggtatcggcctccagaccgtcgccatggtgaccggcggcaagggcgtc
catgtcatcgtgccgcttcgaccgcaagcagaatgggaagaggcaaaagccttcgccaag
cgggttgcgcaatctttcgccgagcgcgacccggagcatttcgtcgccaccatgtcgaag
gcgaagcgcaagggtcggatcttcatcgactggctgaggaacgaccgcggcgccaccgcg
atcgccccctattccacgcgtgcccgcgccggtgggcccgtcgctacgccggtcggctgg
gacgagctcgagaggcttgacgccgccaacggctttcacattgccgacatcctggagcgc
atcgagacgggcaccgatccctggccggagatcgccaagacaaagcagtcgctgacgaag
aaggtactggaatcggcggtcggctag
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