Sinocyclocheilus anshuiensis: 107675758
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Entry
107675758 CDS
T04917
Name
(RefSeq) collagen alpha-1(V) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sanh
Sinocyclocheilus anshuiensis
Pathway
sanh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sanh00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107675758
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sanh00536
]
107675758
Glycosaminoglycan binding proteins [BR:
sanh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107675758
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
107675758
NCBI-ProteinID:
XP_016325675
LinkDB
All DBs
Position
Unknown
AA seq
2004 aa
AA seq
DB search
MDTPIRWKVKRRFKEVRLSVLLVFLMFVTSRVSAAEPADLLKILDFHSLPEGVSKTTGFC
THRKSSKGPDVAYRVTKDAQLSAPTKQLYPSSVFPEDFSILATVRPKKGSQSFLLSVYNE
QGIQQLGLEVGRSPVFLYEDHLGKPGPEDYPLFRGVNLADGKWHRVAISVHKQSITLVLD
CKKKVTRTLSRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLMIVSDHRAALDYCEHYSP
DCEVPAPEQPQNQDPNTDEYNTEDDNYYYEYPYYEDMDAEKTEETTADETTGTETEDLTV
SVPDSGRVVTSVITSGTGGSSSSSSSSSSSSSSSSSSSSSTTNTGEEPYDGYDGYETGYE
TYYDETTSRPDGSRTISITSTGTGTGGEVDMGLGGEVDMGLGDLDMRIITSSSSSSSGGG
GSGRVHSTVTVIHNGTSGSSSGSGTGSSTRIITSSSSSSGVSTGSSSSSSSSSTSVDGGY
DDNLYGEGLDLTYGEGYGEGYGEGEYNVERGGGSTSTSVSVGGGSVSSSGSVGGGSSSAG
ASVGAGSVATGGQGGIGGETDSIDIDNFKEESITDYTEADLEKMYDYDNLYPDGDKELPA
ETDEIYGQVDGLRGEKGQKGEPAIIEPGMLVEGSPGPEGPTGLPGPPGSSGSPGSPGEPG
ERGPNGRPGLPGADGLPGPPGTVLMLPFRMSTGGDSGHKGPAVSAQEAQMQAIMQQARLA
MRGPTGPMGLTGRSGPLGPPGVSGLKGESGESGPQGPRGPLGSLGPPGKPGRRGRPGSDG
ARGMPGQTGPKGDRGFDGLAGLPGEKGHRGETGPQGPPGPPGEDGERGGDGEVGPRGLPG
ESGPRGLLGPKGPQGSPGPPGVTGMDGHPGPKGNIGPQGEPGPPGQQGNPGAQGLPGPQG
AIGPPGEKGPTGKPGLAGVAGADGPPGHPGKEGPSGEKGHLGPPGPQGPIGYPGPRGVKG
SDGVRGLKGNKGEKGEDGFPGFKGDMGIKGDRGELGAAGPRGEDGPEGPKGRSGLPGDAG
PLGSTGEKGKLGVPGLPGYPGRQGPKGSQGFQGFQGTSGEKGTRGTAGKSGPRGQRGPTG
PRGERGPRGPTGKAGPKGNSGSDGPPGPPGERGPLGAAGPTGFPGPKGPPGPPGKDGLPG
HPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGSAGKEG
AKGDPGPAGPTGKDGPPGLRGFPGERGLPGPVGSAGLKGNEGPPGPPGPAGSPGERGAAG
PAGPTGLPGRPGPQGPPGPAGEKGGPGEKGPQGPAGRDGIQGPVGLPGPAGPIGSPGEDG
DKGEIGESGQKGSKGDKGEQGPPGPVGSQGPSGQPGPPGADGEPGPRGQQGLFGQKGDEG
ARGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIG
NPGAVGEKGDAGEPGEPGPQGDIGPSGPRGERGEKGEAGPAGSAGPPGPKGPPGDDGPKG
SPGPSGFPGDPGPPGEPGSPGLDGASGDKGDDGEPGQAGSPGPTGETGPTGPPGKRGPHG
PAGPEGRQGEKGAKGESGLLGPPGKTGPVGPQGSPGKPGSEGLRGVPGPVGEQGLPGAPG
PDGPPGPMGPPGLPGLKGDTGIKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTAGTKG
DTGIYGPAGPIGPIGPPGLPGPPGPKGAKGSSGQTGPKGEAGQPGFPGPPGPPGDVIHPL
PIQSSPKRAKRNIDASQMMDDAADANYKDYEDGMEEIFGSLNSLKLEIEQMKHPLGTQSN
PARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVYCNFTAGGESCIFPEKKSEGARLTS
WVKENPGSWFSEFKRGKLLSYVDAEGNPIGVVQMTFLRLLSATARQNLTYNCYQSVAWHD
QELDSYDKAIRFLGSNDEEMSYDNNPYIRAAVDGCALKKGYEKTILEINTPKVEQVPFVD
IMFNDFGGATQKFGFEVGPACFIG
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atggatacacctatcagatggaaagtaaagcggaggtttaaggaggtgcggctctcggta
ctcctagtattcctgatgtttgtcacctcacgagtcagcgcagctgagccagctgatctc
ctaaagattttagattttcacagtttgccggagggtgtatcgaaaactacaggcttctgc
acacaccggaagtcatcaaaagggcctgatgtcgcctacagagtcacaaaagatgcacag
cttagcgctcctactaaacaactctacccctcatccgtgtttcctgaggacttttccatc
ttggcgacggtgaggcctaaaaaaggcagtcagtccttcctgctgtcggtgtataacgaa
cagggcatccagcagctcggtctggaggtgggacggtctcctgtcttcctgtacgaggat
cacctgggcaaacccggcccggaggactacccgctcttcagaggggtcaacttggcggac
ggaaagtggcaccgtgtggcgatcagcgttcacaaacagagcatcactctggttttggac
tgtaagaaaaaggtgacacggacgctatccagaagccctcaccccatcatcgacaccaaa
ggcattgtggtcttcgggacacgtatcttggatgaggaggtgtttgagggtgacatccag
cagctgatgattgtatcggaccatcgtgctgcgcttgactactgtgagcactacagccct
gactgtgaggttcctgcacccgaacagccccagaaccaagacccaaacactgatgaatat
aacacagaggatgataactactattacgaatatccgtactatgaggacatggatgcagaa
aagacagaagaaacgacagccgatgaaacgactggaaccgaaactgaagacctaacggtg
tctgttccggatagcggtcgtgtggttacgtcggttatcactagtggaacaggaggctcc
agcagttcatcgagtagctcctcgtcatcctcctcttcatcctcttcatcatccagctct
accacgaatactggcgaggaaccgtatgatggctacgatggatacgagaccggatacgaa
acatactatgacgagacgacctcacggcctgatggctcccggaccatcagcatcactagc
acaggcacaggtaccggtggagaagtggatatgggactgggcggtgaggtggatatggga
ctgggagacctggacatgcggatcatcacatcatcatcatcatcatcatcaggaggagga
ggaagtggaagagtacactcaaccgtcacagtcattcacaatggaacctccggctccagt
tctggctccggcactggctctagcaccagaatcattactagctccagctccagctctgga
gtcagtaccggctccagctccagctccagctccagctctacctcggttgatggtggttat
gatgataacctgtacggtgagggtcttgatctgacctatggagagggatatggagaagga
tacggagagggagagtataatgtggaacgaggcggcggcagcaccagcacttcagtgtcc
gtagggggcggatctgtttcttcaagtggctcagttgggggcggatccagcagcgctggg
gccagcgtgggggcagggtctgttgccacgggaggacaggggggaatcggtggagagaca
gactccatcgatatcgacaacttcaaggaggagtccatcacggattacaccgaagcagac
ctggagaagatgtatgattatgacaacctgtaccctgacggcgacaaagagctgcccgcc
gagaccgacgagatctacggacaggtggatggactgagaggagagaaagggcaaaaagga
gagcctgcaatcattgaacccggaatgctggttgaaggctcacctggtccagagggtccc
acaggtctccccggtcctccaggttcatcgggatccccaggtagccctggagagcccggt
gagaggggtcctaatggtcgccctggtctgcctggagctgatggtcttccaggccctcca
gggactgtcctgatgttgcctttccgcatgagtacaggaggggacagcggacataaaggt
cctgcagtttctgcccaagaggctcagatgcaagccatcatgcagcaggccaggctggcg
atgaggggtccaaccggacccatgggtttgacgggccgttctggtcctctggggcctcct
ggtgtgtctggactgaaaggagagtctggagaatcaggacctcagggtcctcgtggtcca
ctgggatcccttggccctcctggaaagcctggtagaaggggtcgacccggctcagatgga
gccagagggatgcctggacagacgggaccaaagggtgaccgaggattcgatgggctggct
ggtttgcctggagaaaagggtcacaggggtgagacgggtcctcaggggcctcctgggcct
ccaggagaggatggagaaagaggtggcgatggagaggtcggacccagaggtctgcccgga
gaatcgggtcctcgtggtttgttgggccccaaaggtccccaagggtctccaggacctcct
ggtgtgactggtatggacggacatcctggacctaaaggaaacattggtcctcaaggtgag
ccaggacctccaggacaacaaggcaaccctggagctcagggacttccaggtcctcaggga
gcgatcggacctccaggagagaagggtcccactggaaaaccaggcttagcaggagtggca
ggagctgacggacctccgggccacccaggaaaagaagggccatctggcgagaaaggacac
ttgggacctccgggtcctcaagggccgatcggatatcctggccctcgaggtgtaaagggt
tctgatggagtccgcgggctgaaaggaaacaagggtgaaaagggagaagacggatttcca
ggatttaagggagatatgggcatcaaaggcgacaggggagaacttggtgccgccggaccc
agaggtgaagacgggcctgaaggacccaaaggaagatctggtttacctggagatgctgga
ccgctcgggtcgaccggagagaagggtaagcttggtgttcccgggttgccaggttatcca
ggaagacaaggccccaagggttctcaaggattccagggattccaaggaaccagtggagag
aaaggcacgagggggacagcagggaagtcgggaccccgaggacagagaggacctacggga
ccccgtggtgaaagagggccaaggggaccaactgggaaagcaggaccaaagggcaactca
ggaagcgacggccccccaggaccacccggtgaacggggtccgttaggtgcagcgggacct
actggattccccggccctaagggtccaccgggtcctcccggaaaggacgggctgcccgga
caccctggccagagaggagagactggtttccaaggtaaaactggacctcccggaccccca
ggtgtagtcggacctcagggaccaacaggtgagacaggaccaatgggagagcgaggccac
cctggacccccaggaccacccggtgaacagggtctacctggatctgctggaaaagaggga
gcaaagggagatccaggtcctgcaggacccacaggtaaagatggacctccaggactcaga
gggttcccaggcgagagaggcttaccaggacctgtgggatcagcaggtttgaaagggaat
gaaggacctccagggccacctggacccgctggctctcctggtgaacgtggtgctgctggc
ccagctggacctactggcctcccaggccgacccggacctcaaggacccccgggcccagct
ggagagaaaggtggacctggcgagaaaggacctcaaggcccagccggtagagatggtatt
cagggacctgtgggacttccaggcccagccggacctatcggatccccaggagaggatggt
gataagggtgagattggagagtcgggacagaagggaagcaaaggtgacaagggcgagcag
ggtcctccaggtcccgtcggtagccaaggtccttcgggtcagccgggtccaccgggtgct
gatggagagccaggtcccagaggtcagcagggtctgtttggacagaagggagatgagggc
gcacgaggtttcccaggaccacccggacccgtcggccttcagggtttgcctggacccccc
ggtgagaagggagagaccggtgacgtcggtcagatgggtccacccggtcctcctggcccc
agaggcccctccggacccccaggagccgatggaccacagggacctccaggaggaatcggc
aacccaggagccgtgggagaaaagggagacgccggtgaaccaggagaaccaggtccgcaa
ggagacatcggtccttcaggtccaagaggagagcgtggtgaaaagggagaagccggaccc
gctggttctgcagggccccccggaccaaaaggaccaccaggagatgatggtcccaaagga
agtcctggtccaagtggtttccctggtgatcctggtcctcctggagagcctggttcacct
ggtttggatggtgcttctggagataagggtgatgatggagagcctggtcaggcgggatcc
cctggacctactggtgaaaccggccccactggccctccaggaaagagaggacctcatgga
cctgctggacctgaaggaagacagggagagaagggtgccaagggtgaatctggtctcctg
ggtccacctggtaagacaggtccagttggtcctcagggaagccctggaaaacctggttcc
gagggtctgagaggggtgcctggaccagtgggagaacaaggactgcccggtgctcctgga
cccgatggacctcctggaccgatgggtcctcctggactgcctggactgaagggagatact
ggtattaaaggtgaaaagggtcatcctggtctcattggactcatcggacctccaggagaa
cagggagagaagggagacagagggctgccgggtccacagggaactgcaggaactaaagga
gacactggtatttacggacccgctggacctattggacccattggacctcctggtctcccg
ggtcctcctggtcctaaaggtgctaaaggatcatctggtcagactgggccgaagggagaa
gctggacagccgggatttcctggacctccaggtccacctggtgatgtcatccaccctctg
cctatccagtccagccccaaacgggcaaagaggaacattgatgccagccagatgatggat
gacgctgcagacgccaactacaaagactatgaggatggcatggaggagatattcggctct
ctgaactctctcaaactggagattgaacagatgaaacacccgctgggcacacagagtaac
cccgcccgcacctgcaaagacctgcagctgtgccacccagatttcccagatggtgaatac
tggattgatccgaaccagggctgctccagagactctttcaaagtgtactgtaacttcaca
gcaggtggagagagctgcatcttcccagagaaaaagagtgaaggggccagactcacctct
tgggtgaaggagaatccagggtcgtggttcagtgaattcaaacgtggtaaactgctctcg
tacgtggatgcggagggcaatccgatcggagtggtccagatgacgttcctgcgtttactc
agcgccacggctcggcagaacctgacttacaactgttaccaatcggtggcttggcacgac
caggaactggactcttacgataaagccatccgcttcctgggctccaatgatgaggagatg
tcttacgataacaacccatacatcagagccgccgtcgacggatgtgcgttgaaaaagggc
tatgaaaagactattcttgagatcaacacaccaaaagtggagcaggtaccatttgttgac
attatgttcaacgatttcggcggagcgacgcagaagttcggctttgaggtcggaccggcc
tgcttcatcggctaa
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