Salinispora arenicola: Sare_0311
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Entry
Sare_0311 CDS
T00613
Name
(GenBank) chaperonin GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
saq
Salinispora arenicola
Pathway
saq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sare_0311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saq03019
]
Sare_0311
03110 Chaperones and folding catalysts [BR:
saq03110
]
Sare_0311
03029 Mitochondrial biogenesis [BR:
saq03029
]
Sare_0311
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
saq04147
]
Sare_0311
Enzymes [BR:
saq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
Sare_0311
Messenger RNA biogenesis [BR:
saq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
Sare_0311
Chaperones and folding catalysts [BR:
saq03110
]
Heat shock proteins
HSP60 / Chaperonin
Sare_0311
Mitochondrial biogenesis [BR:
saq03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
Sare_0311
Exosome [BR:
saq04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Sare_0311
Exosomal proteins of other body fluids (saliva and urine)
Sare_0311
Exosomal proteins of breast cancer cells
Sare_0311
Exosomal proteins of colorectal cancer cells
Sare_0311
Exosomal proteins of bladder cancer cells
Sare_0311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
DUF5021
CbiA
Motif
Other DBs
NCBI-ProteinID:
ABV96241
UniProt:
A8LYN0
LinkDB
All DBs
Position
345675..347297
Genome browser
AA seq
540 aa
AA seq
DB search
MAKMIAFDEEARRGLERGMNQLADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIE
LEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQAMVREGLRNVAAGANPMALKRGIE
TAVASVSEELLKLAKDVETKEQIASTASISAGDPSVGEIIAEAMDKVGKEGVITVEESNT
FGLELELTEGMRFDKGYISAYFMTDPERMEAVFDDPYILIVNSKISSVKDLLPILEKVMQ
SGKPLLIIAEDIEGEALATLVVNKVRGTFKSVAVKAPGFGDRRKAMLGDIAILTGGQVIS
EEVGLKLDAVNLDMVGRARKVVVTKDETTIVDGAGDAEQIQGRVNQIRAEIDKSDSDYDR
EKLQERLAKLAGGVAVIKVGAATEVELKERKHRIEDAVRNAKAAVEEGIVPGGGVALVQA
GKTAFDKLDLTGDEATGAQIVKIALDGPLRQIAVNAGLEGGVVVEHVRGIEAGHGLNAAT
GGYVDLMAAGIIDPAKVTRSALQNASSIAALFLTTEAVVADKPEKTPAAPAAPGGGEMDF
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggccaagatgatcgcgttcgacgaggaggctcgccgcggcctcgagcggggcatgaac
cagctcgctgacgccgtgaaggtgaccctcggccccaagggccgcaacgtcgtgctcgag
aagaagtggggcgcccccaccatcaccaacgatggtgtgagcatcgccaaggagatcgag
ctcgaggacccgtacgagaagatcggcgccgagctggtcaaggaggtcgcgaagaagacc
gacgacgtcgccggtgacggcacgacgacggcgaccgtcctggcccaggccatggtccgc
gagggcctgcgtaacgtggccgccggcgccaacccgatggccctgaagcggggcatcgag
accgcggtcgccagcgtctcggaggagctgctgaagctcgccaaggacgtcgagaccaag
gagcagatcgcctccaccgcctccatctccgctggtgaccccagcgtcggcgagatcatc
gccgaggcgatggacaaggtcggcaaggaaggcgtcatcaccgtcgaggagagcaacacc
ttcggcctggagctcgagctcaccgagggtatgcgcttcgacaagggctacatctccgcc
tacttcatgaccgatccggagcggatggaggccgtcttcgacgacccgtacatcctgatc
gtcaacagcaagatctcctcggtcaaggacctgctcccgatcctggagaaggtcatgcag
tcgggtaagccgctgctgatcatcgccgaggacatcgagggtgaggccctggcgaccctg
gtcgtcaacaaggtccgtggcaccttcaagtccgtcgccgtcaaggctccgggcttcggt
gaccgccgcaaggccatgctcggtgacattgccatcctcaccggtggccaggtcatcagc
gaggaggtcggcctcaagctcgacgccgtcaacctcgacatggtgggccgggcccgcaag
gtcgtggtgaccaaggacgagaccaccatcgtcgatggcgccggcgacgccgagcagatc
cagggtcgggtcaaccagatccgggccgagatcgacaagagcgactccgactacgaccgg
gagaagctgcaggagcggctggccaagctggccggcggcgttgcggtgatcaaggtcggt
gcggccaccgaggtcgagctgaaggagcgcaagcaccgcatcgaggacgccgttcgcaac
gcgaaggccgccgtcgaggagggcatcgtcccgggtggtggcgtcgcgctggtgcaggcc
ggcaagaccgccttcgacaagctcgacctgaccggtgacgaggcgaccggcgcccagatc
gtcaagatcgcgctggacggcccgctgcggcagatcgccgtcaacgccggcctcgagggt
ggcgtcgtcgtcgagcacgtgcgtggcatcgaggcgggtcatggcctgaacgccgcgacc
ggtgggtacgtggacctgatggccgcgggcatcatcgacccggccaaggtgacccggtcg
gcgctgcagaacgcgtcgtcgatcgcggcgctgttcctcaccaccgaggccgtcgtggcg
gacaagccggagaagaccccggccgccccggctgctccgggcggcggggaaatggacttc
tga
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