Salinispora arenicola: Sare_4351
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Entry
Sare_4351 CDS
T00613
Name
(GenBank) DNA polymerase LigD polymerase domain
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
saq
Salinispora arenicola
Pathway
saq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sare_4351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saq03400
]
Sare_4351
Enzymes [BR:
saq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sare_4351
DNA repair and recombination proteins [BR:
saq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sare_4351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ABW00133
UniProt:
A8M565
LinkDB
All DBs
Position
complement(4917338..4918249)
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AA seq
303 aa
AA seq
DB search
MPADRLRVEVAGRTLELSNLDKVLYPAAGFTKGEVIDYYTRVAPVLLPHLSDRALTRIRF
PNGVDGGSFFEKNAPAATPSWVRTETLPAPGSTKGRESIDYVVADELPTLVWLANLAALE
LHTPQWRIGAYPDMMVVDLDPGPPAGLRQCCRVALLMRDRLADDGIDSYPKTSGKKGMQL
SCPIAGTQPADVVSGYARRIAQELERASPKLIVSKMARKLRAGKVFIDWSQNSAAKTTVA
PYSLRAQPVPSVSTPLTWTEVEAGGAGKRPSVRPYTAAEVLTRVAEQGDLLAPLLTGGPE
LPG
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgaccggctccgggtcgaggtggccggccgcaccctggagttgtctaatctg
gacaaggtgctctatccggcggctgggttcaccaagggtgaggtgatcgactactacacc
cgggtggctccggtgctcctgccgcacttgtccgaccgggcactgacccggatccgtttc
ccgaacggcgtcgacggcggctcgtttttcgagaagaacgctccggcggcgacaccgagc
tgggtgcgtaccgagacgttgcctgcccctggttcgacgaaggggcgggagagcatcgac
tacgtggtcgccgacgagcttcccaccctggtctggttggccaatctcgccgccctggaa
ctgcacacaccccagtggcgaatcggggcgtacccggacatgatggttgtcgacctcgac
ccgggcccaccggccggcctacggcagtgctgtcgggtggcgctgttgatgcgggaccgg
ctcgctgacgatggaatcgactcgtatccgaaaacctcgggaaagaagggcatgcagctc
tcctgcccgatcgccggaacccaaccggccgacgtcgtgtccggctacgcccgacggatc
gcccaggaactggagcgggccagtccgaagctgatcgtgtccaagatggcgcgaaagctg
cgagcgggcaaggtcttcatcgactggagccagaacagtgcggcgaagacgacggtcgcg
ccgtactcgttgcgcgctcaaccggtgccgtcggtgtccaccccgctgacctggaccgag
gtggaggccggtggggccggcaaacggccgtcggtcaggccgtacacggcggccgaggtg
ctcacccgggttgcggagcagggcgacctgctcgccccgctccttaccggcggccccgag
ctgccgggatag
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integrated database retrieval system