Salinispora arenicola: Sare_4352
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Entry
Sare_4352 CDS
T00613
Name
(GenBank) DNA polymerase LigD ligase region
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
saq
Salinispora arenicola
Pathway
saq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
saq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Sare_4352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saq03400
]
Sare_4352
Enzymes [BR:
saq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Sare_4352
DNA repair and recombination proteins [BR:
saq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Sare_4352
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ABW00134
UniProt:
A8M566
LinkDB
All DBs
Position
complement(4918239..4919180)
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AA seq
313 aa
AA seq
DB search
MPGVPPKPMLAMTGELPAGAGWAYEFKWDGIRALADLSGGRRHVYARSGVEVTVAYPELA
GLPAQVDNALLDGEVVLFGAAGQPSFTALAERMHVRESGRAARLAATLPVTYLIFDLLRL
DGVDLTGHSWQQRRAALDGLGLAGPRWAVPPVFWDGPATYQAAGEHGLEGVMAKRVGSIY
RPGTRSPDWVKVKLEVTGDFVVGGWRPGARRLGGLLVGVPRPDGRLTFRGRVGGGIGAAL
ERELLRELEPLRAAGSPFAGDLPREDARTAVWVSPRVVVEVKYGQLTPDGRLRFPRVLRL
RPDKPAEEVDDAG
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcgtgccgcccaagccgatgctcgcgatgaccggggagttgccggcgggtgcc
ggctgggcgtacgagttcaagtgggacgggatacgcgccctggctgacctctccggcggc
cgacgacacgtgtacgcccgttccggcgtcgaggtcaccgtcgcctacccggaactggcg
ggcctgcccgcgcaggtggacaacgcactccttgatggcgaggtggtgctttttggtgcc
gctggacagccgtcgttcacggcgctcgccgagcggatgcacgtccgggagtcgggtcgg
gccgcgaggctggcggcgacgctgcccgtcacgtacctgatcttcgacctgctacgcctc
gatggcgtcgacctgaccggccactcgtggcaacaacggcgggccgccctggacgggttg
gggctggccggcccacgatgggcggttcccccggtcttctgggacggcccggccacctac
caggcggcgggggagcacggtctggagggggtgatggccaagcgggtcggttcgatctat
cggccgggtacccggtcgccggactgggtcaaggtcaagttggaggtgaccggcgacttc
gtcgtgggtggctggcggccgggagcgcgccggcttggcggactgttggtcggggtgccc
cggcccgacggccgactcacgttccgggggcgggtcggcggtggcatcggcgcggcgttg
gagcgggaactgctgcgcgagttggaaccgctgcgtgcggccggttcgcccttcgccggg
gacctgccccgcgaggacgcccggaccgcggtctgggtgtcaccccgggtcgtggtggag
gtcaagtacggccagctcaccccggacgggcgactgcgtttcccgcgggtgctgcggtta
cgtccggacaaacccgccgaggaggtcgacgatgccggctga
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