Sorex araneus (European shrew): 101542288
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Entry
101542288 CDS
T07854
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
sara
Sorex araneus (European shrew)
Pathway
sara03015
mRNA surveillance pathway
sara03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sara00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101542288 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101542288 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sara03019
]
101542288 (CPSF6)
Messenger RNA biogenesis [BR:
sara03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
101542288 (CPSF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
101542288
NCBI-ProteinID:
XP_004602861
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All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MAPSPSPPLSPPPHSSPPPAPPAFGRRLRGGHVRNKSFGFRTQLRRELDFVMIPRILVSW
NLFAMEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPAVGDDVGKGAAPNVVYT
YTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEA
SSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRA
AFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVKGTRPLFLETRIPWHM
GHSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVL
FPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLA
PPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPP
GREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQS
KVSADDRCKVLISSLQDCLHGIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHD
DYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggcgccttccccctctcctcctctttctcctcctcctcattcttctccacctcccgct
cctcccgccttcggaaggcggcttcgcggtgggcacgttcgcaacaagtcctttggcttt
cggacccaattaaggagagaattagactttgttatgattcctcgcatccttgtttcatgg
aacctgtttgctatggaagctgaatatggtgggcatgatcaaatagatttgtatgatgat
gtcatctctccgtctgctaataatggagatgccccagaagaccgggactacatggatact
cttccaccagctgttggagatgatgtggggaagggagcagcgcccaatgttgtctatacg
tatactggaaagagaatcgcattgtatattggaaatctaacatggtggacaacggatgaa
gacttaactgaagcagttcattctttgggagtaaatgatattttggagataaaatttttt
gaaaatcgagcaaatggccaatcaaaggggtttgcccttgttggcgttggatctgaagca
tcctcaaaaaagttaatggatctgttgcctaaaagagaactgcatggtcagaatcctgtt
gtaactccatgcaataaacagttcctgagtcaatttgaaatgcagtccaggaaaactaca
caatcaggacaaatgtctggggaaggtaaagctggtcctccaggaggcagttcacgtgca
gcatttccacaaggtggtagaggacggggccgttttccaggggctgttcccggtggggac
agatttcctgggccagcaggaccaggagggccacccccaccatttccaggaaatttgatc
aagcatcttgttaaaggaactcggcctttgttcctggaaactaggattccatggcatatg
gggcacagcatagaggaaatacccatttttggcctaaaagctggacagactccaccacgt
ccacctttgggtccaccaggcccaccaggtccacctggtcctccacctcctggtcaggtt
ctgccacctcctttagctgggcctcctaatcgaggagatcgccctccaccaccagttctt
tttcctggacaaccttttgggcagcctccattgggtccgcttcctcctggccctccacct
ccagttccaggctatggcccccctcctggcccaccacctccacaacagggaccacctcca
cctccaggcccctttccgcctcgtccacctggccctcttgggccacccctcacacttgct
cctcctccgcatcttcctggaccacctccaggtgctccaccaccagctccacatgtgaac
ccggctttcttccctccaccaactaacagcggcatgcctacatcagatagtcggggtcca
ccacccactgatccatacggtcggcctccaccatatgataggggtgactatgggcctcca
ggaagggaaatggatactgcaagaacgccattgagcgaagctgagtttgaagaaatcatg
aatagaaatagggcaatctcaagcagtgctatttcaagagctgtgtctgatgccagtgct
ggcgattatgggagtgctattgagacattggtgactgcaatttctttaattaaacaatcc
aaagtatctgctgatgatcgctgcaaagttcttattagctctttgcaagattgccttcat
ggaattgaatccaaatcttatggttctgggtcaagacgtgaacgatcaagagagagggac
catagtagatcacgagaaaagagtcggcgtcataaatctcgaagtagagatcgccatgat
gattattatagggagagaagtagagaacgcgagagacatcgggatcgagatagggaccga
gatcgggagcgtgaccgcgagcgggaatatcgtcatcgttag
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