Streptomyces argyrophyllae: HKX69_32435
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Entry
HKX69_32435 CDS
T09378
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sarg
Streptomyces argyrophyllae
Pathway
sarg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HKX69_32435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sarg03400
]
HKX69_32435
Enzymes [BR:
sarg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HKX69_32435
DNA repair and recombination proteins [BR:
sarg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HKX69_32435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
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Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QJS13636
UniProt:
A0A6M4PVA2
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Position
complement(7170428..7171450)
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AA seq
340 aa
AA seq
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MTGPEVVEISAVTAVTLPLIPPMLATPGSLPPAAQDARWAYETKQDGQRVMAYLPGDGSV
LLRARSGEDITGAYPELRPLGGALGTVPAVLDGEVLALDERGRADFQLLQSRMGLAHAPA
RAARRAAQVPVHLVLFDVPYLEEPLVRLPYRRRRARLEELGLAGPYWSTPGAVTGHGAEA
LAATREHGLEGLVCKRLDSVYEPGVRSRAWIKIRNMRAEDVIVGGWLPGKGRLTGLPGAV
LAGQRDPEGRLRYVGGVGTGWSGAERARLADLLRDTASDRCPFDPVPRVPGARWVLPRLV
GEVSYSTRTRHGMLRQPSWLRLRPDLTPEESAADLPGEPG
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggaccggaggtggtcgagatctctgccgtgaccgccgtgaccctgccgctgatt
ccgcccatgctcgcgacgcccggcagcctgccgcccgccgcgcaggacgcgcggtgggcg
tacgagaccaagcaggacggccagcgggtgatggcgtacctgcccggcgacggcagtgtg
ctgctgcgcgcccgctcgggcgaggacatcaccggcgcctaccccgagctccggccgctt
ggcggggcgctgggcaccgtccccgccgtgctggacggcgaggtgctggccctggacgag
cggggccgcgccgacttccagctgctgcagagccggatgggcctcgcgcacgcccccgcg
cgggcggcgcgccgggccgcccaggtcccggtgcacctggtgctgttcgacgtgccctat
ctggaggagcccctggtacggctgccgtaccgccggcggcgggcgcggctggaggagctg
gggctcgcggggccgtactggtcgacacccggggcggtgaccgggcacggcgccgaggca
ctggcggcgacccgggaacacggcctggagggcctggtgtgcaagcggctggactcggtg
tacgagcccggtgtgcgctcccgcgcctggatcaagatccggaacatgcgggccgaggac
gtgatcgtcggcggctggctgcccggaaagggccggctgacgggactgcccggagcggtg
ctggccggccagcgcgacccggagggccggctgcggtacgtcggcggggtgggcaccggc
tggagcggggccgagcgcgcccggctggcggacctgctgcgggacacggcgagcgaccgg
tgccccttcgaccccgtgccgcgtgtccccggcgcccgctgggtgctgccccggctggtg
ggcgaggtcagctacagcacccgcacccggcacgggatgctgcgccagccctcctggctg
cggctgcgcccggatctcaccccggaggagtcggcggcggacctgcccggggagcccggc
tga
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